; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G082700 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G082700
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
Genome locationCicolChr05:1520897..1522495
RNA-Seq ExpressionCcUC05G082700
SyntenyCcUC05G082700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048973.1 mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa]1.7e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKK+ MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKASQAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
KGN56523.1 hypothetical protein Csa_010072 [Cucumis sativus]2.2e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKK+ MKVDGSGKKKKGG GFQVGKKKVKTKLTA AKAKASQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_022147302.1 uncharacterized protein LOC111016287 [Momordica charantia]2.7e-2487.65Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKK++MKVDGSGK+KKGG GFQVGKKKVKTKLTAAAKAKA+QAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_022941890.1 uncharacterized protein LOC111447114 [Cucurbita moschata]3.7e-2692.59Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKK+KMKVDGSGKKKKGG+GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
XP_030457135.1 uncharacterized protein LOC115678006 [Syzygium oleosum]5.9e-2487.65Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDL+REK EKEKAAKKLQAKK+KMKVDGSGKKKKG  GFQVGK+K+KTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
TrEMBL top hitse value%identityAlignment
A0A0A0L493 Uncharacterized protein1.1e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKK+ MKVDGSGKKKKGG GFQVGKKKVKTKLTA AKAKASQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A5A7TZC8 Mediator of RNA polymerase II transcription subunit 2-like8.1e-2793.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKK+ MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKASQAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1D208 uncharacterized protein LOC1110162871.3e-2487.65Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKK++MKVDGSGK+KKGG GFQVGKKKVKTKLTAAAKAKA+QAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1FV29 uncharacterized protein LOC1114471141.8e-2692.59Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKK+KMKVDGSGKKKKGG+GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
A0A6J1IED7 uncharacterized protein LOC1114732881.8e-2692.59Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKK+KMKVDGSGKKKKGG+GFQVGKKKVKTKLTAAAKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45860.1 unknown protein3.2e-2072.5Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELD
        MSKKNNL++RKKQ+E++LQ+EK+ ++K  KKL A K+KMKVDGSGKKKKG  GF VGKKK+KTKLT  AKAKA+QAMELD
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTKLTAAAKAKASQAMELD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCAGAATGGGCCGACCCGGTTCAATATAAAATTGCTTCATCACAGTTTCCAACCAAATTCGGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCAGCGAG
CAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGG
CTGCGAAGAAGCTTCAAGCAAAGAAGCATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAAGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAG
TTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA
mRNA sequenceShow/hide mRNA sequence
GGTTAATGAATGCAGAATGGGCCGACCCGGTTCAATATAAAATTGCTTCATCACAGTTTCCAACCAAATTCGGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCA
GCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGA
AAAGGCTGCGAAGAAGCTTCAAGCAAAGAAGCATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAAGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGA
CCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGAGAGATTGGCAATGGTGGCAGTGGCAGAATCTTCAGGGTTCCCATTAGCCCT
TCGATTTGGAGGAAATCTGGTGAAATGCATTGCATTATTTGCTCTCAAGTAATTTATCGTTGGGGATGGGATATTTTTCTCATTCTTTTAGATCGGAGTCCTTTCGTGTA
ATGTAATTCGGGTAGTTCCCTTTTGACATTTTTTTCTTCTTTTTGGTAGGTCCTTGTACATTATTTCACATTTCTCAATGAAAACTCACTTTCTTATTAAGG
Protein sequenceShow/hide protein sequence
MNAEWADPVQYKIASSQFPTKFGLGFKKTVIFAISASKFPAAGRNNMSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKHKMKVDGSGKKKKGGSGFQVGKKKVKTK
LTAAAKAKASQAMELDK