; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G084840 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G084840
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionVesicle-associated membrane protein
Genome locationCicolChr05:3235675..3237321
RNA-Seq ExpressionCcUC05G084840
SyntenyCcUC05G084840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU16566.1 unknown [Glycine max]2.4e-0635.9Show/hide
Query:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK
        PVQN      L +V HH+  +FRNL  + SKLA LFRM++T+LH+LL+ R                   P+F VQ V +  C     +   ++ L +L+K
Subjt:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK

Query:  GNRNLSTSSFNSNYTIS
         +R+LS +    N TIS
Subjt:  GNRNLSTSSFNSNYTIS

ACU18757.1 unknown [Glycine max]2.8e-0736.75Show/hide
Query:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK
        PVQN      L +V HH+  +FRNL  + SKLA LFRM++T+LH+LL+ R                   P+F VQ V +  C     +   ++ L +L+K
Subjt:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK

Query:  GNRNLSTSSFNSNYTIS
         +R+LS + F  N TIS
Subjt:  GNRNLSTSSFNSNYTIS

TrEMBL top hitse value%identityAlignment
A0A2P2JY14 Uncharacterized protein4.4e-0654.39Show/hide
Query:  VGNSSCSFPTTISLVEIFLDSLKKGNRNLSTSSFNSNYTISCRFTNANQIDVQRKRN
        +G+S CSFP TIS++E+FL+SLK  N NLS SSFNSNYT+ C  T  N  +++  +N
Subjt:  VGNSSCSFPTTISLVEIFLDSLKKGNRNLSTSSFNSNYTISCRFTNANQIDVQRKRN

A0A2P2JY15 Vesicle-associated membrane protein1.6e-0850.63Show/hide
Query:  MIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKKGNRNLSTSSFNSNYTI
        MIHTILH+LL+F S                   K  V+ +G+S CSFP TIS++E+FL+SLK  N NLS SSFNSNYT+
Subjt:  MIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKKGNRNLSTSSFNSNYTI

C6T4F6 Uncharacterized protein1.1e-0635.9Show/hide
Query:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK
        PVQN      L +V HH+  +FRNL  + SKLA LFRM++T+LH+LL+ R                   P+F VQ V +  C     +   ++ L +L+K
Subjt:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK

Query:  GNRNLSTSSFNSNYTIS
         +R+LS +    N TIS
Subjt:  GNRNLSTSSFNSNYTIS

C6TAA5 Uncharacterized protein1.4e-0736.75Show/hide
Query:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK
        PVQN      L +V HH+  +FRNL  + SKLA LFRM++T+LH+LL+ R                   P+F VQ V +  C     +   ++ L +L+K
Subjt:  PVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQTVGNSSCSFPTTISLVEIFLDSLKK

Query:  GNRNLSTSSFNSNYTIS
         +R+LS + F  N TIS
Subjt:  GNRNLSTSSFNSNYTIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCTGCACTCTGAGGTTGTTCCAGACATGGGAGTATGTTTTATGGACAATGCCACTGCCAACTTTCCTCCGGACTGCAATACTGCCAGTTCAAAACTCA
CCAGGCTACTTTTACCTTCTCGATGTTTTCCATCATAACACCCTTGACTTCAGAAACCTGTGCCTTAACTTTAGCAAGCTTGCTGATCTCTTCAGGATGATCCAC
ACAATATTGCATATGCTCCTTAAGTTTCGATCTGTGGAAATTAGTTTAAAATATACATTTATTAAGAACAGGACATCAGAAATAGTACCCAAATTCTTTGTTCAG
ACTGTGGGCAACAGCAGTTGCAGCTTTCCCACCACCATATCTCTTGTTGAAATCTTCCTTGACTCGCTCAAGAAAGGCAATAGGAATTTGTCTACCAGCAGCTTC
AATAGCAACTACACAATAAGCTGCAGATTCACAAACGCAAATCAAATAGATGTGCAAAGAAAACGAAACAGAAAGCTGGATAAAATTATAAAGAGATTATCCAAT
CCACCAACAAATACCTACCAGGCTACCACTCTGAACCATATGACCAAATTTTTAATGAAAGCAATCGCAATAAGACCCAAACCAATTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCTGCACTCTGAGGTTGTTCCAGACATGGGAGTATGTTTTATGGACAATGCCACTGCCAACTTTCCTCCGGACTGCAATACTGCCAGTTCAAAACTCA
CCAGGCTACTTTTACCTTCTCGATGTTTTCCATCATAACACCCTTGACTTCAGAAACCTGTGCCTTAACTTTAGCAAGCTTGCTGATCTCTTCAGGATGATCCAC
ACAATATTGCATATGCTCCTTAAGTTTCGATCTGTGGAAATTAGTTTAAAATATACATTTATTAAGAACAGGACATCAGAAATAGTACCCAAATTCTTTGTTCAG
ACTGTGGGCAACAGCAGTTGCAGCTTTCCCACCACCATATCTCTTGTTGAAATCTTCCTTGACTCGCTCAAGAAAGGCAATAGGAATTTGTCTACCAGCAGCTTC
AATAGCAACTACACAATAAGCTGCAGATTCACAAACGCAAATCAAATAGATGTGCAAAGAAAACGAAACAGAAAGCTGGATAAAATTATAAAGAGATTATCCAAT
CCACCAACAAATACCTACCAGGCTACCACTCTGAACCATATGACCAAATTTTTAATGAAAGCAATCGCAATAAGACCCAAACCAATTCACTAA
Protein sequenceShow/hide protein sequence
MEACTLRLFQTWEYVLWTMPLPTFLRTAILPVQNSPGYFYLLDVFHHNTLDFRNLCLNFSKLADLFRMIHTILHMLLKFRSVEISLKYTFIKNRTSEIVPKFFVQ
TVGNSSCSFPTTISLVEIFLDSLKKGNRNLSTSSFNSNYTISCRFTNANQIDVQRKRNRKLDKIIKRLSNPPTNTYQATTLNHMTKFLMKAIAIRPKPIH