; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G085560 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G085560
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L28
Genome locationCicolChr05:3747296..3748745
RNA-Seq ExpressionCcUC05G085560
SyntenyCcUC05G085560
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-6289.26Show/hide
Query:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MA S V GFTP   SGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]3.1e-6490Show/hide
Query:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTP AT SGV+  SSTKLHFRTK NS+LGFLTSQL+GI+ISSNHSLIS + ISTAPL P+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]1.4e-6490Show/hide
Query:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTP AT +GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPIS APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]1.7e-6289.26Show/hide
Query:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MA S V GFTP   SGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]6.9e-6492.62Show/hide
Query:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MAA VV GFTPAT SGV+A SSTKL F TK NSELGFLTSQLAGIKISSNHSLIS SPIS APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein1.5e-6490Show/hide
Query:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTP AT SGV+  SSTKLHFRTK NS+LGFLTSQL+GI+ISSNHSLIS + ISTAPL P+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic6.7e-6590Show/hide
Query:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTP AT +GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPIS APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L286.7e-6590Show/hide
Query:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTP AT +GV+A SSTKLHFRTK NS+LGFL SQL+GIKISSNHSLIS SPIS APL P+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTP-ATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic8.2e-6389.26Show/hide
Query:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MA S V GFTP   SGV+A SS+KLHFR+KAN ELGFL+SQL+GIKISSNHSLIS SPIS APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic8.2e-6389.26Show/hide
Query:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
        MA S V GFTP + SGV+A SS+KLHFRTK N ELGFL+SQL+GIKISSNHSLIS SPIS APL PALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L286.3e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic5.0e-4171.97Show/hide
Query:  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        A S TK    T  + ELGFLTSQL+G++IS   S +      + P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic7.4e-4573.77Show/hide
Query:  RTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K +SEL F+TSQL+G+KISS H + S++P+S  P  P+LQPVARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic1.7e-4482.2Show/hide
Query:  SELGFLTSQLAGIKISSNHSL-ISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIE
        SELGFLTSQL+GI+IS +    I + PIS APL P+LQPVARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIE
Subjt:  SELGFLTSQLAGIKISSNHSL-ISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIE

Query:  KNGLDAVAKKAGIDLRKE
        KNGLDAVAKKAGIDLRKE
Subjt:  KNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L283.7e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family3.5e-4271.97Show/hide
Query:  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF
        A S TK    T  + ELGFLTSQL+G++IS   S +      + P  P +QP VARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRF
Subjt:  APSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQP-VARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRF

Query:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  VKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTTTTCCGGTGTAATTGCACCCTCCTCAACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTT
TCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTAATCTCCACCTCTCCCATTTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTA
GAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGG
TGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAGAATGGACTTGATGCTGTCGCTAAGAAGGCAGGAATTGATCTTCG
TAAGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ACTCAACAAGGCGCTTCCTCAACTTACAACTCTCCTCACTAACAATGGCAGCTTCCGTAGTCTTCGGCTTCACGCCGGCCACTTTTTCCGGTGTAATTGCACCCTCCTCA
ACCAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTAATCTCCACCTCTCCCAT
TTCTACTGCTCCTCTCACACCTGCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGA
CCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGTTTGTCAACTAAGGCTTTGAAAACCATTGAGAAG
AATGGACTTGATGCTGTCGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATTTGGTAACTCTAAAGCCCAAAATTTAATGCTGTAGTCAGAGAGTTGAATATATTT
AATAATGTCCAAAGATTTGTTCATCTTCCCCTTACCATTGAGAACAATTCATCAACTCAGAAGGGGCTGCAGTGTGCTGGGGTAGATGAAGCAATTTGGAAGCCCGTGGG
TTAGTTTCTTTTGTTGTCTTGTCACAAGAGAAAGATCCTTCCTTTCTAGTAATGTGCAAAACTAGTCTATCAAGATTACCAACAGCATTAGGAAGCTATGAGAAGCCATA
GCCCATGTGAAGAAGAAAGGGAAAAGTTGGTTCCTCGTAGCCTCTAGAATCGTCTCTATGGCTGAAGAGAAGGATCGAGCAAATTGCTGGACTTTAGCTTGAGGAGTTTG
ATAATTTAATAGTTGGAGAGTTTTTGAGCAGCATTTGTATCCTTTCTAATTTGTGTAAAAGGCTATTTAGAAT
Protein sequenceShow/hide protein sequence
MAASVVFGFTPATFSGVIAPSSTKLHFRTKANSELGFLTSQLAGIKISSNHSLISTSPISTAPLTPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVW
WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE