; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G086460 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G086460
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCicolChr05:4463166..4463678
RNA-Seq ExpressionCcUC05G086460
SyntenyCcUC05G086460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597407.1 hypothetical protein SDJN03_10587, partial [Cucurbita argyrosperma subsp. sororia]6.5e-5068.68Show/hide
Query:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC SPF FTLIRKTLPIYY    SSNL+ P FLSH +FL   +SAP SRF+L G SPEFP+KSPIP PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM
        FP      PPGPD P PP+PSPPGI+VP+PPHKPPDIEPPRPG PVP PDILP      PPPRP GPEI+TSPS    +PP+
Subjt:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM

KGN56930.1 hypothetical protein Csa_011403 [Cucumis sativus]2.1e-4868.51Show/hide
Query:  MSCNSPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MS  S F FTLIRKTLP YYP S+   I+PF  SH QFL  N+  A  S  +LSG SPEFPE  P+PPPSFPLEIPQFSPPPE+DPSTPSELPSITP P+
Subjt:  MSCNSPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFV
        FPP PPGP+FPKPPLPSPPGI+VP+PP KPP+IEPP PG PVP P+ILPP            PPRP GPEI+TS SP GFV
Subjt:  FPP-PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFV

TYK17238.1 hypothetical protein E5676_scaffold434G00890 [Cucumis melo var. makuwa]2.0e-5169.4Show/hide
Query:  MSCNSPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF
        MSC S F FTLI KTLP YYP SSN ++P   SH QFL  N+ S   SR MLSG SPEFP+  P+PPPS PLEIPQFSPPPE+DPSTPSELPSITP PDF
Subjt:  MSCNSPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF

Query:  PP--PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFVPP
        P   PPGP+FPKPP PSPPGI+VPVPP +PPDIEPP PG PVPGP+ILPP            PPRP GPEI+TSPSP  FVPP
Subjt:  PP--PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFVPP

XP_022949559.1 vegetative cell wall protein gp1 [Cucurbita moschata]4.2e-4968.13Show/hide
Query:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC SPF FTLIRKTLPIYY    SSNL+ P F SH +FL   +SAP SRF+L G SPEFP+KSPIP PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM
        FP      PPGPD P PP+PSPPGI+VP+PPHKPPDIEPPRPG PVP PDILP      PPPRP GPEI+TSPS    +PP+
Subjt:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM

XP_022975412.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.3e-5069.78Show/hide
Query:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC SPF FTLIRKTLPIYY    SSNL+ P FLSH +FL   +SAP SRF+L G SPEFP+KSPIP PS PLEIPQ S  PE+DP TP ELP ITPGPD
Subjt:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM
        FP      PPGPDFP PP+PSPPGI+VP+PPHKPPDIEPPRPG PVP PDILP      PPPRP GPEI TSPS    +PP+
Subjt:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM

TrEMBL top hitse value%identityAlignment
A0A0A0L4M0 Uncharacterized protein1.0e-4868.51Show/hide
Query:  MSCNSPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MS  S F FTLIRKTLP YYP S+   I+PF  SH QFL  N+  A  S  +LSG SPEFPE  P+PPPSFPLEIPQFSPPPE+DPSTPSELPSITP P+
Subjt:  MSCNSPFCFTLIRKTLPIYYPSSN--LISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFV
        FPP PPGP+FPKPPLPSPPGI+VP+PP KPP+IEPP PG PVP P+ILPP            PPRP GPEI+TS SP GFV
Subjt:  FPP-PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFV

A0A200Q4G4 Uncharacterized protein4.3e-0749.59Show/hide
Query:  PEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTP---SELPSITPGPDFPPPPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRP--GLPVPGPDILPPPPR
        PEFP  +    PSFP E+P    PPE+DP  P   +E P  TPGPD    PGPDFP PPLPSPP  ++P+P   PPDI PP+P   LP   P I+PPP  
Subjt:  PEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTP---SELPSITPGPDFPPPPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRP--GLPVPGPDILPPPPR

Query:  PSGPEIVTSP-SPRGFVPPMP
        P  P+I+  P +P    PP+P
Subjt:  PSGPEIVTSP-SPRGFVPPMP

A0A5D3D162 Uncharacterized protein9.7e-5269.4Show/hide
Query:  MSCNSPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF
        MSC S F FTLI KTLP YYP SSN ++P   SH QFL  N+ S   SR MLSG SPEFP+  P+PPPS PLEIPQFSPPPE+DPSTPSELPSITP PDF
Subjt:  MSCNSPFCFTLIRKTLPIYYP-SSNLISPFFLSHPQFLHCND-SAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDF

Query:  PP--PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFVPP
        P   PPGP+FPKPP PSPPGI+VPVPP +PPDIEPP PG PVPGP+ILPP            PPRP GPEI+TSPSP  FVPP
Subjt:  PP--PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPP------------PPRPSGPEIVTSPSPRGFVPP

A0A6J1GD64 vegetative cell wall protein gp12.0e-4968.13Show/hide
Query:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC SPF FTLIRKTLPIYY    SSNL+ P F SH +FL   +SAP SRF+L G SPEFP+KSPIP PS PLEIPQ S  PE+DP TP ELP +TPGPD
Subjt:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM
        FP      PPGPD P PP+PSPPGI+VP+PPHKPPDIEPPRPG PVP PDILP      PPPRP GPEI+TSPS    +PP+
Subjt:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM

A0A6J1IL49 leucine-rich repeat extensin-like protein 36.3e-5169.78Show/hide
Query:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD
        MSC SPF FTLIRKTLPIYY    SSNL+ P FLSH +FL   +SAP SRF+L G SPEFP+KSPIP PS PLEIPQ S  PE+DP TP ELP ITPGPD
Subjt:  MSCNSPFCFTLIRKTLPIYY---PSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPD

Query:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM
        FP      PPGPDFP PP+PSPPGI+VP+PPHKPPDIEPPRPG PVP PDILP      PPPRP GPEI TSPS    +PP+
Subjt:  FPP-----PPGPDFPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILP------PPPRPSGPEIVTSPSPRGFVPPM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTGCAACTCCCCCTTCTGTTTCACTCTCATCAGAAAAACGCTTCCTATTTATTACCCTTCTTCCAATTTGATCTCCCCTTTCTTCCTTTCCCATCCCCAA
TTCCTCCACTGTAATGACTCTGCGCCTTTCTCGCGTTTTATGCTTTCCGGGCACTCGCCGGAGTTTCCCGAAAAAAGCCCCATTCCCCCGCCTTCTTTTCCCCTC
GAAATTCCACAATTTTCGCCTCCTCCGGAGGTTGACCCGAGCACTCCGTCGGAGCTTCCGTCGATAACTCCGGGGCCGGATTTTCCTCCGCCGCCAGGACCGGAC
TTTCCGAAGCCTCCGTTGCCGTCGCCTCCGGGAATTGAGGTTCCGGTCCCGCCCCATAAGCCTCCAGATATAGAGCCACCGCGGCCTGGTTTGCCGGTACCAGGC
CCGGACATTTTGCCGCCGCCGCCGAGGCCCTCTGGTCCGGAGATTGTGACGTCGCCATCTCCACGTGGTTTTGTTCCTCCGATGCCCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTGCAACTCCCCCTTCTGTTTCACTCTCATCAGAAAAACGCTTCCTATTTATTACCCTTCTTCCAATTTGATCTCCCCTTTCTTCCTTTCCCATCCCCAA
TTCCTCCACTGTAATGACTCTGCGCCTTTCTCGCGTTTTATGCTTTCCGGGCACTCGCCGGAGTTTCCCGAAAAAAGCCCCATTCCCCCGCCTTCTTTTCCCCTC
GAAATTCCACAATTTTCGCCTCCTCCGGAGGTTGACCCGAGCACTCCGTCGGAGCTTCCGTCGATAACTCCGGGGCCGGATTTTCCTCCGCCGCCAGGACCGGAC
TTTCCGAAGCCTCCGTTGCCGTCGCCTCCGGGAATTGAGGTTCCGGTCCCGCCCCATAAGCCTCCAGATATAGAGCCACCGCGGCCTGGTTTGCCGGTACCAGGC
CCGGACATTTTGCCGCCGCCGCCGAGGCCCTCTGGTCCGGAGATTGTGACGTCGCCATCTCCACGTGGTTTTGTTCCTCCGATGCCCATTTAG
Protein sequenceShow/hide protein sequence
MSCNSPFCFTLIRKTLPIYYPSSNLISPFFLSHPQFLHCNDSAPFSRFMLSGHSPEFPEKSPIPPPSFPLEIPQFSPPPEVDPSTPSELPSITPGPDFPPPPGPD
FPKPPLPSPPGIEVPVPPHKPPDIEPPRPGLPVPGPDILPPPPRPSGPEIVTSPSPRGFVPPMPI