; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G088190 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G088190
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S21
Genome locationCicolChr05:5901667..5909347
RNA-Seq ExpressionCcUC05G088190
SyntenyCcUC05G088190
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0019722 - calcium-mediated signaling (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR008801 - Rapid ALkalinization Factor
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138185.1 protein RALF-like 33 [Momordica charantia]1.4e-3872.73Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAAEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN
        M +S IHGFL++CAISASYL LSSSTAVDFTGDRQFL LP ES CR   G IAEC L  +    + +  RILAT  RYISY A+RRN+VPCSRRGASYYN
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAAEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN

Query:  CQAGAPANPYSRGCSAITRCR
        C+ GAPANPYSRGCSAITRCR
Subjt:  CQAGAPANPYSRGCSAITRCR

XP_022138421.1 protein RALF-like 33 [Momordica charantia]3.1e-3061.72Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA-------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSR
        M+ S +   L   AI A++L LSS+TA DF+GD + L++P +S CR   GSIAEC LA        EF++ SEI+RRILA T RYISY A++RNSVPCSR
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA-------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSR

Query:  RGASYYNCQAGAPANPYSRGCSAITRCR
        RGASYYNCQ GA ANPY+RGCSAITRCR
Subjt:  RGASYYNCQAGAPANPYSRGCSAITRCR

XP_023000591.1 protein RALF-like 33 [Cucurbita maxima]2.9e-2858.46Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC
        M+ S +  FL   AI A++  LSS+  VDF+GD + L +P ES CR   GSIAEC LA          EF++ SEI+RRILA + RY+SY A++RNSVPC
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNCQ GA ANPY RGC+AITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

XP_028751592.1 protein RALF-like 33 [Prosopis alba]9.8e-2960Show/hide
Query:  SSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA
        SS  +GF ++CAI A +++LSSST VDF GD +    P +S CR   GSI EC L+      +EF++ SE +RRILA  RRYISY A+RRN+VPCSRRGA
Subjt:  SSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGA

Query:  SYYNCQAGAPANPYSRGCSAITRCR
        SYYNC+ GA ANPY RGCS ITRCR
Subjt:  SYYNCQAGAPANPYSRGCSAITRCR

XP_038875155.1 protein RALF-like 33 [Benincasa hispida]1.7e-2859.23Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC
        M  S +   L   AI A++  +SS+TAVDF+GD + L +P +S CR   GSIAEC LA          EF + SEI+RRILATT RYISY A+RRN+VPC
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNC+ GA ANPY+RGC+AITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

TrEMBL top hitse value%identityAlignment
A0A2P5ERZ0 Rapid ALkalinization Factor2.4e-2866.67Show/hide
Query:  ICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA----EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAPA
        ICAI A +LAL+SS+A+DF GD Q   L   SVCR   GSIAEC +A     E ++ SE +RRILAT+ RYISY A+RRN+VPCSRRGASYYNC+ GA A
Subjt:  ICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA----EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAPA

Query:  NPYSRGCSAITRCR
        NPYSRGCSAITRCR
Subjt:  NPYSRGCSAITRCR

A0A6J1C8R0 protein RALF-like 336.6e-3972.73Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAAEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN
        M +S IHGFL++CAISASYL LSSSTAVDFTGDRQFL LP ES CR   G IAEC L  +    + +  RILAT  RYISY A+RRN+VPCSRRGASYYN
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAAEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYN

Query:  CQAGAPANPYSRGCSAITRCR
        C+ GAPANPYSRGCSAITRCR
Subjt:  CQAGAPANPYSRGCSAITRCR

A0A6J1C9N4 protein RALF-like 331.5e-3061.72Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA-------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSR
        M+ S +   L   AI A++L LSS+TA DF+GD + L++P +S CR   GSIAEC LA        EF++ SEI+RRILA T RYISY A++RNSVPCSR
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLA-------AEFKIPSEISRRILATTRRYISYSAMRRNSVPCSR

Query:  RGASYYNCQAGAPANPYSRGCSAITRCR
        RGASYYNCQ GA ANPY+RGCSAITRCR
Subjt:  RGASYYNCQAGAPANPYSRGCSAITRCR

A0A6J1KG89 protein RALF-like 331.4e-2858.46Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC
        M+ S +  FL   AI A++  LSS+  VDF+GD + L +P ES CR   GSIAEC LA          EF++ SEI+RRILA + RY+SY A++RNSVPC
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNCQ GA ANPY RGC+AITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

A0A6J1KVY0 protein RALF-like 332.4e-2856.92Show/hide
Query:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC
        M  S +   +   A+ A++  +SS+TA+DF+GD + L  P +S CR   GSI EC LA          EF++ SEI+RRILATT RYISY A+RRN+VPC
Subjt:  MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---------EFKIPSEISRRILATTRRYISYSAMRRNSVPC

Query:  SRRGASYYNCQAGAPANPYSRGCSAITRCR
        SRRGASYYNC+ GA ANPY+RGCSAITRCR
Subjt:  SRRGASYYNCQAGAPANPYSRGCSAITRCR

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S216.9e-2577.94Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ
        R+ SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GF+RAQGDADS LDRLWQK+K EV QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ

Q3E902 40S ribosomal protein S21-21.5e-2786.57Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ
        R+ SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGFVRAQGDADSG+DRLWQKKKVE  Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ

Q41852 40S ribosomal protein S212.6e-2479.1Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ
        R+ SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GFVRAQGDADS LDRLWQKKK E+ Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ

Q8L9P8 Protein RALF-like 332.6e-2456.52Show/hide
Query:  LMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAP
        + I  +   + A++S ++ DF        +P ES C   +G+IAEC L+    EF++ SEI+RRILATT +YISY A+RRN+VPCSRRGASYYNC+ GA 
Subjt:  LMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAP

Query:  ANPYSRGCSAITRCR
        ANPYSRGCSAITRCR
Subjt:  ANPYSRGCSAITRCR

Q9M337 40S ribosomal protein S21-18.7e-2885.29Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGFVRAQGDADSG+DRLWQKKKVE  QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ

Arabidopsis top hitse value%identityAlignment
AT3G16570.1 rapid alkalinization factor 232.4e-2552.59Show/hide
Query:  IHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA-----------------EFKIPSEISRRILATTRRYISYSAMRRNS
        I   L+I A+    +A+SS  + +F GD      P E+ CR   G+IAEC ++A                 EF++ SEI+RRILA TRRYISY A+RRN+
Subjt:  IHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA-----------------EFKIPSEISRRILATTRRYISYSAMRRNS

Query:  VPCSRRGASYYNCQAGAPANPYSRGCSAITRCRFS
        +PCSRRGASYYNC+ GA ANPYSRGCSAITRCR S
Subjt:  VPCSRRGASYYNCQAGAPANPYSRGCSAITRCRFS

AT3G53890.1 Ribosomal protein S21e6.1e-2985.29Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGFVRAQGDADSG+DRLWQKKKVE  QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e6.1e-2985.29Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ
        R+ SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGFVRAQGDADSG+DRLWQKKKVE  QQ
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ

AT4G15800.1 ralf-like 331.9e-2556.52Show/hide
Query:  LMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAP
        + I  +   + A++S ++ DF        +P ES C   +G+IAEC L+    EF++ SEI+RRILATT +YISY A+RRN+VPCSRRGASYYNC+ GA 
Subjt:  LMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAA---EFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAP

Query:  ANPYSRGCSAITRCR
        ANPYSRGCSAITRCR
Subjt:  ANPYSRGCSAITRCR

AT5G27700.1 Ribosomal protein S21e1.0e-2886.57Show/hide
Query:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ
        R+ SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGFVRAQGDADSG+DRLWQKKKVE  Q
Subjt:  RRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCTCAAACATCCATGGCTTCCTCATGATCTGCGCAATCTCCGCCTCCTATCTGGCCCTCTCTTCATCCACCGCCGTCGATTTCACCGGAGACCGCCAGTTCCT
CCACCTTCCGCAGGAATCTGTTTGTCGTTCAGGATCGGGATCGATCGCCGAGTGCCAGTTGGCGGCGGAGTTCAAGATACCGTCGGAGATCAGCCGCCGGATTCTGGCGA
CTACGAGGCGTTATATTAGCTACAGTGCGATGCGGAGGAACTCGGTGCCGTGCTCCCGACGCGGCGCGTCGTATTACAATTGCCAGGCTGGAGCTCCGGCGAATCCGTAC
TCTCGTGGGTGCAGCGCCATTACTCGATGTAGGTTTTCTAGTTCTAAAGTATTAGTTGATACAGTTCAAGATGCAGAACGAAGAGGCTCCGCAACGAACCGGCTGATTAC
TTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACCGGCCAATTTTCCACTTTTGCTCTCTGTGGTTTCGTTCGGGCCCAGG
GAGATGCTGACAGTGGACTGGATCGGCTCTGGCAGAAGAAGAAAGTCGAAGTGCATCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCTCAAACATCCATGGCTTCCTCATGATCTGCGCAATCTCCGCCTCCTATCTGGCCCTCTCTTCATCCACCGCCGTCGATTTCACCGGAGACCGCCAGTTCCT
CCACCTTCCGCAGGAATCTGTTTGTCGTTCAGGATCGGGATCGATCGCCGAGTGCCAGTTGGCGGCGGAGTTCAAGATACCGTCGGAGATCAGCCGCCGGATTCTGGCGA
CTACGAGGCGTTATATTAGCTACAGTGCGATGCGGAGGAACTCGGTGCCGTGCTCCCGACGCGGCGCGTCGTATTACAATTGCCAGGCTGGAGCTCCGGCGAATCCGTAC
TCTCGTGGGTGCAGCGCCATTACTCGATGTAGGTTTTCTAGTTCTAAAGTATTAGTTGATACAGTTCAAGATGCAGAACGAAGAGGCTCCGCAACGAACCGGCTGATTAC
TTCCAAGGACCATGCTTCTGTCCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACCGGCCAATTTTCCACTTTTGCTCTCTGTGGTTTCGTTCGGGCCCAGG
GAGATGCTGACAGTGGACTGGATCGGCTCTGGCAGAAGAAGAAAGTCGAAGTGCATCAACAATAGATGATTGTGCTGTTCTGGTTCATCTCTATATCAAAGTTTAAAAGG
ATAGAGACACACTTAAAATTTTTTTTGAACCACTCGTAGTTAAGTAGTTTCTTTTGACAACTTAAACTCATTAGTTTCTTTAAATGCAAACTTAACTACGTCTGAGACAG
TACAAGCATTGATGTGGGTCAAAAGAGGGCCAAAACTAAGTTGAATGAAATATGTTGAATTTCATTTTCCATTAAAAATATTTACTAGAGAGATTCAATATGGCCACATG
TGAATGTGAATGTGATGTTGATATGATAAGGATGCTTTTCGGGTTTTGATAGGTTGTCTGCTCTTGGCAAGGGATGAAAATATTAAAATATTAATGGTTATGAATTTAGA
GATTTTTGTACAGATGACCGTTTCATGGCTATATTATGATTGATGACCCACTCGTGCTTGAGTGGAGAAAAATAAGGTTCTTGATGGATGATTATTGCGTTAGAGCTATG
ATAG
Protein sequenceShow/hide protein sequence
MQSSNIHGFLMICAISASYLALSSSTAVDFTGDRQFLHLPQESVCRSGSGSIAECQLAAEFKIPSEISRRILATTRRYISYSAMRRNSVPCSRRGASYYNCQAGAPANPY
SRGCSAITRCRFSSSKVLVDTVQDAERRGSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFVRAQGDADSGLDRLWQKKKVEVHQQ