; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G088480 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G088480
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionExopolygalacturonase-like
Genome locationCicolChr05:6096124..6096336
RNA-Seq ExpressionCcUC05G088480
SyntenyCcUC05G088480
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049518.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.6e-1368.57Show/hide
Query:  MKLS--LLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKLS  LLLFS LLA      NFSAA GFD+ LPPSY  E P GDPW GLRVFDV+DYGAV+DGKT ++L
Subjt:  MKLS--LLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

KAE8650398.1 hypothetical protein Csa_010965 [Cucumis sativus]1.8e-1471.43Show/hide
Query:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKL  SL LFSSLLA++L     SAA GFD+ LPPSY AE P GDPW GLRVFDVNDYG V+DGKT NSL
Subjt:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

XP_004134495.1 exopolygalacturonase [Cucumis sativus]1.8e-1471.43Show/hide
Query:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKL  SL LFSSLLA++L     SAA GFD+ LPPSY AE P GDPW GLRVFDVNDYG V+DGKT NSL
Subjt:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

XP_023539060.1 exopolygalacturonase-like [Cucurbita pepo subsp. pepo]6.4e-1261.84Show/hide
Query:  MKLS-LLLFSSLLALSLSPRNF-------SAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKLS L++F  LLA+S+S RNF       SAAG +D LL P   AE P GDPW GL VFDV DYGA++DGKTENSL
Subjt:  MKLS-LLLFSSLLALSLSPRNF-------SAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

XP_038885913.1 exopolygalacturonase-like [Benincasa hispida]9.5e-2486.76Show/hide
Query:  MKLSLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKLSLL+FS LLALSLS RNFSAAG FD LLPPSY+AESP GDPWMGLRVFDVNDYGA++DGKTENSL
Subjt:  MKLSLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

TrEMBL top hitse value%identityAlignment
A0A0A0L932 Uncharacterized protein8.7e-1571.43Show/hide
Query:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKL  SL LFSSLLA++L     SAA GFD+ LPPSY AE P GDPW GLRVFDVNDYG V+DGKT NSL
Subjt:  MKL--SLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

A0A5A7U2P8 Exopolygalacturonase-like1.3e-1368.57Show/hide
Query:  MKLS--LLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL
        MKLS  LLLFS LLA      NFSAA GFD+ LPPSY  E P GDPW GLRVFDV+DYGAV+DGKT ++L
Subjt:  MKLS--LLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTTCACTACTTTTATTCTCTTCTCTTCTGGCCCTTTCTCTATCTCCCCGCAATTTCTCTGCCGCCGGTGGATTTGATTTGCTTCTTCCGCCGTCGTACGCGGC
GGAGTCCCCCGGGGGAGATCCTTGGATGGGACTGCGTGTTTTTGATGTAAATGATTATGGGGCAGTTTCTGATGGAAAGACGGAGAACAGCTTGGTAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTTCACTACTTTTATTCTCTTCTCTTCTGGCCCTTTCTCTATCTCCCCGCAATTTCTCTGCCGCCGGTGGATTTGATTTGCTTCTTCCGCCGTCGTACGCGGC
GGAGTCCCCCGGGGGAGATCCTTGGATGGGACTGCGTGTTTTTGATGTAAATGATTATGGGGCAGTTTCTGATGGAAAGACGGAGAACAGCTTGGTAAATTAA
Protein sequenceShow/hide protein sequence
MKLSLLLFSSLLALSLSPRNFSAAGGFDLLLPPSYAAESPGGDPWMGLRVFDVNDYGAVSDGKTENSLVN