; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G090080 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G090080
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationCicolChr05:7707886..7710379
RNA-Seq ExpressionCcUC05G090080
SyntenyCcUC05G090080
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]2.5e-9391.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDDAP+ATSSKP TSS QGFGSSSPQST+T+KS PK+VKQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]4.8e-8986.93Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDDAP+A      TSSPQGFGSSSPQST+T+KS PK++KQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]5.9e-9592.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDDAP+ATSSKPSTSSPQGFGSSSPQST+T+KS PK+VKQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]8.3e-8182.27Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR
        MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDDAP+       TSS QGFGS S QSTT++KS+PKA     KQKGKR+R
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+  
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND

Query:  EKS
        +KS
Subjt:  EKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]1.6e-9594.47Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFTRKPYHLPNPSL+FPSKPKFII SQN SESEKPISK VDDAPLATSSKPS+SSPQGFGSSS QSTTT+KS+PKAVKQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVG+VDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein2.3e-8986.93Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT++PYHLPNPSLHF SKPKFIIKSQN SES+KPISK+VDDAP+A      TSSPQGFGSSSPQST+T+KS PK++KQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic2.9e-9592.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDDAP+ATSSKPSTSSPQGFGSSSPQST+T+KS PK+VKQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 21.2e-9391.46Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII
        MALQILHHSPSSFT+KPYHLPNPSLHF SKPKFIIKSQN SESEKPISKIVDDAP+ATSSKP TSS QGFGSSSPQST+T+KS PK+VKQKGKR+RASII
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASII

Query:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS
        RRSPVEKPVFVGEVDE+ AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKI DEKS
Subjt:  RRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic6.8e-8182.27Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR
        MALQI+HHSPSSFTRKPYHLP   LHFPSK KFIIKSQN SESEKPISK VDDAP+       TSS QGFGS S QSTT++KS+PKA     KQKGKR+R
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+  
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND

Query:  EKS
        +KS
Subjt:  EKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic5.8e-8081.28Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR
        MALQI+HHSPSSFTRKPYHLP   L+FPSKPKFIIKSQ+ SESEKPISK VDDA +       TSS QGFGS S QSTT++KS+PKA     KQKGKR+R
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAV----KQKGKRRR

Query:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND
        ASIIRRSPVEKPVFVGEVDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+  
Subjt:  ASIIRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIND

Query:  EKS
        +KS
Subjt:  EKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA21.0e-4153.77Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNK-SNPKAVKQKGKRRRASI
        MALQI  HSP SF+ +PYHL          P+F IK QNS           D     + SK S+SS  GFGS +  S+   K S   +  +KGK +R  +
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNK-SNPKAVKQKGKRRRASI

Query:  IRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEK
         RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+  ++
Subjt:  IRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation27.3e-4353.77Show/hide
Query:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNK-SNPKAVKQKGKRRRASI
        MALQI  HSP SF+ +PYHL          P+F IK QNS           D     + SK S+SS  GFGS +  S+   K S   +  +KGK +R  +
Subjt:  MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNK-SNPKAVKQKGKRRRASI

Query:  IRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEK
         RR+PVEKPVF+ E     A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+  ++
Subjt:  IRRSPVEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAACCTAAATTCATCATC
AAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATGCTCCACTTGCGACTTCATCCAAGCCATCTACCTCATCCCCTCAAGGTTTC
GGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAATCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCGGAGGGCATCCATTATCCGGCGCTCTCCTGTG
GAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTCATT
CTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACACCAACTGTCTCTCTT
TTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAACGATGAGAAATCATAA
mRNA sequenceShow/hide mRNA sequence
CAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCTTTCACCAGAAAACCCTATCATCTTCCCAACCCATCTCTCCATTTCCCTTCTAAAC
CTAAATTCATCATCAAATCGCAGAACTCATCGGAATCCGAAAAGCCCATTTCGAAAATTGTTGATGATGCTCCACTTGCGACTTCATCCAAGCCATCTACCTCAT
CCCCTCAAGGTTTCGGCTCTTCATCCCCGCAATCGACGACCACGAACAAATCAAATCCAAAGGCTGTTAAGCAGAAGGGTAAGCGGCGGAGGGCATCCATTATCC
GGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAGGCAGCTAAGGAACAGAGCAGGAACGAGAGCTACTTTCTTCTTACTTGGTTGGGTC
TTGGCGCTGTCATTCTCGTCGAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCAGAAGAGTGGGACAAGTTCTTCGTCAAATATTTGTATCCATCCTTCACAC
CAACTGTCTCTCTTTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAACGATGAGAAATCATAATTTAATCCTTTTTGCT
TGATGTTCTGTATTTGATGTGAAGACCTGAAAAATCTCAAGTGCCTATAGATCTTGTTTATACAAAGTATCTCGTTTTACTGAGAAACTGAGGATGCAATTTTCT
TTAGCTCAAAAGCAAATGAGATGCTGTT
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTRKPYHLPNPSLHFPSKPKFIIKSQNSSESEKPISKIVDDAPLATSSKPSTSSPQGFGSSSPQSTTTNKSNPKAVKQKGKRRRASIIRRSPV
EKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKINDEKS