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CcUC05G090630 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G090630
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA-directed RNA polymerases II and V subunit 6B
Genome locationCicolChr05:8306602..8309565
RNA-Seq ExpressionCcUC05G090630
SyntenyCcUC05G090630
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0015031 - protein transport (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0005768 - endosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0035091 - phosphatidylinositol binding (molecular function)
InterPro domainsIPR006110 - RNA polymerase, subunit omega/K/RPB6
IPR006111 - Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit
IPR012293 - RNA polymerase subunit, RPB6/omega
IPR020708 - DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
IPR028363 - DNA-directed RNA polymerase, subunit RPB6
IPR036161 - RPB6/omega subunit-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574158.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia]6.6e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TYK22284.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa]6.6e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_004140788.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus]6.6e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_008439178.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]6.6e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

XP_038878213.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]6.6e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

TrEMBL top hitse value%identityAlignment
A0A5A7TBT6 PX domain-containing protein3.2e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3DFB9 DNA-directed RNA polymerases II, IV and V subunit 6A3.2e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A5D3E797 DNA-directed RNA polymerases II, IV and V subunit 6A-like3.2e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1HXF2 DNA-directed RNA polymerases II, IV and V subunit 6A-like3.2e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

A0A6J1J2R7 DNA-directed RNA polymerases II, IV and V subunit 6A-like3.2e-39100Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

SwissProt top hitse value%identityAlignment
O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC21.9e-2869.89Show/hide
Query:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        V +L   +R   N   +  + +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC21.9e-2869.89Show/hide
Query:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        V +L   +R   N   +  + +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q32PE0 DNA-directed RNA polymerases I, II, and III subunit RPABC22.5e-2869.89Show/hide
Query:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED
        V +L   +R   N   +  + +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Subjt:  VNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED

Q9FJ98 DNA-directed RNA polymerases II, IV and V subunit 6A6.2e-4096.34Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Q9SJ96 DNA-directed RNA polymerases II and V subunit 6B2.4e-3996.34Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

Arabidopsis top hitse value%identityAlignment
AT2G04630.1 RNA polymerase Rpb61.7e-4096.34Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG

AT5G51940.1 RNA polymerase Rpb64.4e-4196.34Show/hide
Query:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
        SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt:  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAACGATGATGTTCCTGGTGAACCTGTTGAAGCTGAGTAAAAGGAA
GATGAAGAACCTGTTGAACGTGTGCGTCTCAAAATTTATGACTAAGTATGAGCGTGCTAGGATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCAGTGATGG
TTGAGTTGGAGGGTGAGACTGATCCACTCGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGAC
TGGGGCGTTGATGAATTAATTGTGGAGGACTCTTGGAAAAGGCAAGTTGGCGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
AGTCGGAGTTGACGTCCGCCGTCGTCAGTTACATCGGCAATTGAGGGTTTTAGGGTGTAACCACTAACCAGAGAGGCGACACAGTTTCTGTCGATCATCAATGGCGGACG
ACGATTACAATGACCTCGAAATTGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCCACACACACACATATATATTCAATATTGGTTTCTCCAATATTTTTATGTTCCTCTGG
TTTCAATTGGTTTCTTACAAATTTTGTCAAATCAAAAACCCTAATTTCGAAACTAAGTTCGTTCCTTCAAGTTCAACTTCGTGTAGTACGGATTTGGGACTGAATATGTC
GGGGAAAACAGTTCGGTATGATGAAATATCACTTAGGTATTGGGAAGGAGATGCTATCACGTATCAGAACCAAACTTGATCGTTCGAGCGATTCTGCACACTTTGATTAT
CTGTAGTTATAAGCCTGTGATGAGCAACTTAAAACAGTTACTTTGGCCAATGTTTGATTTTCTAGCCGCCTTACAGCTTACAATACCAATTTTTAAGGTCGAAGCGTGTG
CGATAATGTTAGATTGTTGCTTGTGACGTATTCTACTAGGGCTTTTCTTTAGGTATGAATTATTGACTTCTTCTGCCTCGAAAACGTGGCTGCTGGAAAAATGTTTTTAT
TCAAAATTTCAACTTTTTAGTACCTTCAGAATCAGATACCAAATTAATTAAGTTTATAACTGTCTCCCGAGATGTTTACGAACTTAGGCTTATTCTGGATGCTTATGTTC
ACAATCGTTATATTTTACTGAACGACTTTATGTTAAGTTGGTTTTGTTTATTGTTGGGAATTACACGGTTTCTTTATTAAAAGGATCTCTGATAACCTTTATCTTTATAA
TGGATTACCTTGTCTAACAGTTTAAAGGATTGTTTTTTAAAGCTTTCCTGTTAGTAGTTTATTTAATCAGGATAGGCCTCTTGCTGCATATGCATATTAGATCTTCATTA
GCAACATCCACAAATTACCGAGTATTATCAGTCTTCAAAATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAACG
ATGATGTTCCTGGTGAACCTGTTGAAGCTGAGTAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTCTCAAAATTTATGACTAAGTATGAGCGTGCTAGGATTTTGGG
TACACGTGCCCTCCAAATCAGCATGAATGCTCCAGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTCGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCT
TCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAATTAATTGTGGAGGACTCTTGGAAAAGGCAAGTTGGCGGTGCTTGATTGATCTGT
GTGGGTGTTGTTACGATATATGAGATAATAGATCTCAATTTCACAGCGATTAGCGCACCAGTTCCCATTTGAAAAGGAGAACACGACTACTATTGTTTTGTTGCATAACT
CTATTCTCTATAATATATATTGGAAAGGAACTTCTGTTACTGTATTGACTAGCATTGTTTTTACCATTATAAACCATGCCATAAC
Protein sequenceShow/hide protein sequence
MKMSHQNPRLRKVLKKNWIIITTMMFLVNLLKLSKRKMKNLLNVCVSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED
WGVDELIVEDSWKRQVGGA