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CcUC05G091490 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G091490
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionArabinogalactan peptide 22
Genome locationCicolChr05:9136742..9137549
RNA-Seq ExpressionCcUC05G091490
SyntenyCcUC05G091490
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03143.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa]2.9e-1785.51Show/hide
Query:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_008465391.1 PREDICTED: arabinogalactan peptide 22 [Cucumis melo]1.4e-1684.06Show/hide
Query:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_022140891.1 arabinogalactan peptide 22-like [Momordica charantia]1.2e-1577.94Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAV RACFGIYA ++ A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLALVLTYIIH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_022945187.1 arabinogalactan peptide 22-like [Cucurbita moschata]4.9e-1782.35Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRACFGIY AV++A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLAL LTYIIH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

XP_038898060.1 arabinogalactan protein 41-like [Benincasa hispida]1.8e-1988.24Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVL+ACFGIYAAV++AVFYVV+LP  VSAAE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

TrEMBL top hitse value%identityAlignment
A0A1S3CNS5 arabinogalactan peptide 226.9e-1784.06Show/hide
Query:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A5A7U3P4 Arabinogalactan peptide 226.9e-1784.06Show/hide
Query:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++L  +VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A5D3BTZ5 Arabinogalactan peptide 221.4e-1785.51Show/hide
Query:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRA CFGIYAAV++AVFYV++LP  VS+AE SSSPAPAPTSDGTTIDQGIAYVLML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A6J1CHE0 arabinogalactan peptide 22-like5.9e-1677.94Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAV RACFGIYA ++ A+ +V+ LP  VS AEHSSSPAPAP+SDGTTIDQGIAY+LMLLALVLTYIIH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

A0A6J1G081 arabinogalactan peptide 22-like2.4e-1782.35Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        MAVLRACFGIY AV++A+FYVV LP  VS AEH+SSPAPAPTSDGT IDQGIAY+LMLLAL LTYIIH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.3e-0861.54Show/hide
Query:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q8L9T8 Arabinogalactan protein 417.9e-1055.88Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        M+  R  FG+  + ++++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+ALVLTY+IH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 221.4e-1166.67Show/hide
Query:  VMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        ++AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Subjt:  VMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 204.3e-0856.14Show/hide
Query:  AAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        +  V+A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.1e-0961.54Show/hide
Query:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        A+F  V   +   A   S +PAPAPTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT3G61640.1 arabinogalactan protein 203.1e-0956.14Show/hide
Query:  AAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        +  V+A+F  V   ++  A   S +PAP+PTSDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  AAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT5G24105.1 arabinogalactan protein 415.6e-1155.88Show/hide
Query:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        M+  R  FG+  + ++++ + + LP+A +    S++PAPAPTSDGTTIDQGIAYVLML+ALVLTY+IH
Subjt:  MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 221.0e-1266.67Show/hide
Query:  VMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH
        ++AVF ++S+ +   A  HSSSPAPAPTSDGT+IDQGIAYVLM++AL LTY IH
Subjt:  VMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGGTTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCC
AGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGCTGTGGTTATGGCTGTCTTTTATGTTGTTTCTTTGCCTGTGGCTGTATCTGCAGCTGAACATTCATCTTCTCC
AGCTCCAGCTCCCACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGTTGGCTTTAGTGCTCACTTATATCATCCATTGA
Protein sequenceShow/hide protein sequence
MAVLRACFGIYAAVVMAVFYVVSLPVAVSAAEHSSSPAPAPTSDGTTIDQGIAYVLMLLALVLTYIIH