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CcUC05G091900 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G091900
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCicolChr05:9618233..9619725
RNA-Seq ExpressionCcUC05G091900
SyntenyCcUC05G091900
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU96058.1 Rpl2, partial [Trigonia sp. CCD-2012]1.9e-0886.67Show/hide
Query:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLI
        M IHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE L+
Subjt:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLI
KAF3449787.1 hypothetical protein FNV43_RR05865 [Rhamnella rubrinervis]3.8e-0993.18Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLI
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGELLI
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLI
RHN60315.1 putative ribosomal protein L2 [Medicago truncatula]3.8e-0963.64Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTDMPLCINGY
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A     +GQ     STD PL I  Y
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTDMPLCINGY
XP_039688654.1 50S ribosomal protein L2, chloroplastic-like [Medicago truncatula]1.5e-0865.22Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTD
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A     +GQ     STD
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTD
YP_009501439.1 ribosomal protein L2 [Passiflora pittieri]1.9e-0866.13Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQK
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ + +     T  +   +G K
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQK
TrEMBL top hitse value%identityAlignment
A0A1D8D6T4 50S ribosomal protein L2, chloroplastic9.2e-0975.93Show/hide
Query:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        MAIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
A0A1D8D7B4 50S ribosomal protein L2, chloroplastic9.2e-0975.93Show/hide
Query:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        MAIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  MAIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
A0A396I9I8 Putative ribosomal protein L21.9e-0963.64Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTDMPLCINGY
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A     +GQ     STD PL I  Y
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTDMPLCINGY
A0A3S5H3Z9 50S ribosomal protein L2, chloroplastic9.2e-0964.06Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEE
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ + +   V T  +   +G  ++
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEE
A0A3S7WEF4 50S ribosomal protein L2, chloroplastic9.2e-0964.06Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEE
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ + +   V T  +   +G  ++
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEE
SwissProt top hitse value%identityAlignment
A0A377 50S ribosomal protein L2-A, chloroplastic9.4e-1175.47Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
A0A398 50S ribosomal protein L2-B, chloroplastic9.4e-1175.47Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
P18663 50S ribosomal protein L2-A, chloroplastic9.4e-1175.47Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
P21434 50S ribosomal protein L2, chloroplastic5.5e-1175.47Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE  + ++ + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
Q8S8V3 50S ribosomal protein L2-A, chloroplastic9.4e-1175.47Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLGK GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L21.5e-1173.58Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLG+ GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
ATCG01310.1 ribosomal protein L21.5e-1173.58Show/hide
Query:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA
        AIHNIEITLG+ GQLARA  AVAKLIAKEGKSATLKLPSGE+ +  + + C+A
Subjt:  AIHNIEITLGKRGQLARA--AVAKLIAKEGKSATLKLPSGELLIYALEEVCTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATACATAACATAGAAATCACACTTGGGAAGAGGGGACAATTAGCTAGAGCAGCTGTAGCGAAACTGATTGCAAAAGAAGGGAAATCGGCCACATTAAAATTACC
TTCTGGGGAGTTGTTGATCTATGCTTTGGAAGAAGTTTGTACAGCTTGGGAAGAGGTTTTGATTGGTCAAAAAGAAGAATGTACTTCAACCGATATGCCCTTATGTATCA
ATGGATACACAAATTACAAAGTAGAAAACCATAAAAGACAGATAGAGCAA
mRNA sequenceShow/hide mRNA sequence
GCATGGCCATACATAACATAGAAATCACACTTGGGAAGAGGGGACAATTAGCTAGAGCAGCTGTAGCGAAACTGATTGCAAAAGAAGGGAAATCGGCCACATTAAAATTA
CCTTCTGGGGAGTTGTTGATCTATGCTTTGGAAGAAGTTTGTACAGCTTGGGAAGAGGTTTTGATTGGTCAAAAAGAAGAATGTACTTCAACCGATATGCCCTTATGTAT
CAATGGATACACAAATTACAAAGTAGAAAACCATAAAAGACAGATAGAGCAA
Protein sequenceShow/hide protein sequence
MAIHNIEITLGKRGQLARAAVAKLIAKEGKSATLKLPSGELLIYALEEVCTAWEEVLIGQKEECTSTDMPLCINGYTNYKVENHKRQIEQ