CuGenDBv2

Gene ID	CcUC05G092100
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	CicolChr05:9823192..9828527
RNA-Seq Expression	CcUC05G092100
Synteny	CcUC05G092100
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-154

90.54

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Query:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQSSSF  P A+N  K+SFHEARFP S SSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
Subjt:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI
        LVDFLVSSLRKVGNVTVSCTRIPLT L+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIR
        GEIN TKKGKFA+ELI+
Subjt:  GEINSTKKGKFAVELIR

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

9.8e-154

91.77

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Query:  ATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSF  P A+N ++L F+EARFP   SSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPEL
        PPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDI+LQEE GAQVVIVPEL
Subjt:  PPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPEL

Query:  VDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKIG
        VDFL+SSLRKVGNVTVSCTRIPLTALEYEPPK KTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKIG
Subjt:  VDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIR
        EINSTKKGKFAVELIR
Subjt:  EINSTKKGKFAVELIR

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

7.5e-154

90.88

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Query:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIGALWSLRRAAQ+SSF  P A+N   LSFH+ARFP S SSP GSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
Subjt:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP
        LTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VP
Subjt:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPK KTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT +TKNGT L+TGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAVELIR
        IGEINSTKKGKF+VELIR
Subjt:  IGEINSTKKGKFAVELIR

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

1.2e-154

91.48

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Query:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQSSS   P AVN  K+SFHEARFP S SSPLGSSG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
Subjt:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI
        LVDFLVSSL KVGNVTVSCTRIPLT L+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIR
        GEIN TKKGKFAVELIR
Subjt:  GEINSTKKGKFAVELIR

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

2.9e-158

93.08

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Query:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIGA WSLRRAAQSSSF  P AVN +KLSFHEARFP S SSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNF
Subjt:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP
        LTPPVVKES+LA++KLADVKAIAQGGYPEAERCRISVG+ADEL SDPDI+SALSITGNF FHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV+VP
Subjt:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPLTAL+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWT ITKNGTIL+TGDIVSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAVELIR
        IGEINSTKKGKFAVELIR
Subjt:  IGEINSTKKGKFAVELIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

4.7e-154

91.77

Show/hide

Query:  ATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSF  P A+N ++L F+EARFP   SSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPEL
        PPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDI+LQEE GAQVVIVPEL
Subjt:  PPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPEL

Query:  VDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKIG
        VDFL+SSLRKVGNVTVSCTRIPLTALEYEPPK KTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKIG
Subjt:  VDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIR
        EINSTKKGKFAVELIR
Subjt:  EINSTKKGKFAVELIR

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

3.6e-154

90.88

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Query:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIGALWSLRRAAQ+SSF  P A+N   LSFH+ARFP S SSP GSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
Subjt:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP
        LTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VP
Subjt:  LTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPK KTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT +TKNGT L+TGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAVELIR
        IGEINSTKKGKF+VELIR
Subjt:  IGEINSTKKGKFAVELIR

A0A6J1FSF6 uncharacterized protein LOC111446880 isoform X1

8.9e-153

90.25

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Query:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAA+SSSF  P AVN  K+SFHEARFP S SSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPD++SALSITGNF F  C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
Subjt:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISS-GDVRVNWTQITKNGTILRTGDIVSVSGKGRLK
        LVDFLVSSLRKVGNVTVSCTRIPLT L+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVD ISS GDVRVNWT ITKNGTIL+TGDIVSVSGKGRLK
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISS-GDVRVNWTQITKNGTILRTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAVELIR
        IGEIN TKKGKFA+ELI+
Subjt:  IGEINSTKKGKFAVELIR

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

1.1e-153

90.22

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Query:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAA+SSSF  P AVN  K+SFHEARFP S SSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPD++SALSITGNF F  C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
Subjt:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI
        LVDFLVSSLRKVGNVTVSCTRIPLT L+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIR
        GEIN TKKGKFA+ELI+
Subjt:  GEINSTKKGKFAVELIR

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

5.6e-155

91.48

Show/hide

Query:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQSSS   P AVN  K+SFHEARFP S SSPLGSSG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  AATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVG+ADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
Subjt:  TPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI
        LVDFLVSSL KVGNVTVSCTRIPLT L+YEPPK KTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTIL+TGDIVSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIR
        GEIN TKKGKFAVELIR
Subjt:  GEINSTKKGKFAVELIR

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

5.1e-20

30.7

Show/hide

Query:  TNFLTPPVVKESML--AIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPD--IISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKG
        T+FL P   +E ++  A+   ADV     GGY  AER R ++ + + +T +     + A ++     F    H   LGA++G G+ R+K GDI+   E  
Subjt:  TNFLTPPVVKESML--AIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPD--IISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKG

Query:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSV
         Q+++  +  DF+ + L + G   VS  +I L+ L      ++      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+
Subjt:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSV

Query:  SGKGRLKIGEI-NSTKKGKFAVELIRDK
         G GR  + +I   TKK K+ V   R K
Subjt:  SGKGRLKIGEI-NSTKKGKFAVELIRDK

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

1.3e-116

67.19

Show/hide

Query:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MA TS+   W + R A  S           K        P  +S PL  S +  C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT
Subjt:  MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        +FLTPP+VKES+  +EK ADVK +AQGGYPEAERCRIS+G+ D LTSDPDI++ALSITGNF F PCSHGDFLGAILGTGI+REKLGDI++QEEKGAQV+I
Subjt:  NFLTPPVVKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGR
        VPELVDF+V++L KVGNV V+C++IPL ALEYEPP+  +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI++TGD+VSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIR
        LKIGEIN TKKGKFAVE+IR
Subjt:  LKIGEINSTKKGKFAVELIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTTTTATAGGCCCTTTTGCCGTTAACCGCGATAAGCTCTCCTTCCAC
GAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTT
GGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTG
GTGAAAGAGTCAATGCTGGCTATAGAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGTATGCA
GATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGCATCACAGGAAATTTTACGTTTCACCCCTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGT
ACGGGCATTGCTAGGGAAAAACTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTG
CGCAAGGTTGGCAATGTCACGGTTTCTTGTACAAGGATTCCGTTGACAGCTCTTGAATATGAACCACCGAAGATTAAGACATTTAAAACCATTGAGGCATCTCTT
AGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGTGGCGATGTTCGTGTCAATTGGACGCAAATTACAAAA
AATGGAACCATTTTAAGGACTGGTGATATCGTTTCTGTTAGTGGAAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAG
CTTATCAGAGATAAAGGAATATATTGGTTGAGAGAAGTTCATACAAAAGGGGAGATCAAGATATCTCTTCAACAGCTAAAAGGTGAAAATCTCAATTAG

mRNA sequence

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Protein sequence

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MAATSIGALWSLRRAAQSSSFIGPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPV
VKESMLAIEKLADVKAIAQGGYPEAERCRISVGYADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSL
RKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILRTGDIVSVSGKGRLKIGEINSTKKGKFAVE
LIRDKGIYWLREVHTKGEIKISLQQLKGENLN

CcUC05G092100 (gene) of Watermelon (PI 537277) v1 genome