; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G095970 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G095970
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionReverse transcriptase
Genome locationCicolChr05:20094997..20098593
RNA-Seq ExpressionCcUC05G095970
SyntenyCcUC05G095970
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149380.1 uncharacterized protein LOC111017810 [Momordica charantia]2.2e-0848.78Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P      V PCW G++ICFKC KEGH+AR CP   S  +A   K  + A   A QGG  +ARVFALT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

XP_022149796.1 uncharacterized protein LOC111018143 [Momordica charantia]1.8e-0744.3Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P        PCW G+ ICFKC KEGH+AR CP     +           ATQGG Q+AR+F LT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

XP_022156067.1 uncharacterized protein LOC111023035 [Momordica charantia]2.8e-0852.17Show/hide
Query:  PCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PCW G++ICF+C KEGH+AR CP   S  +A   K  + A   A QGG Q+ARVFALT+ + E  +AVV
Subjt:  PCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]4.8e-0836.51Show/hide
Query:  SPLSPLSLSSCDPRQPPSSIPRTMLPRGWRPRGGLGIPLLPGDGANKQPGANPPIPPEVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPV
        SPL  +  SS   R+ PS+    +L    R     G+P +      +  G           CW+G K CF+CG+EGH+AR CP     +         PV
Subjt:  SPLSPLSLSSCDPRQPPSSIPRTMLPRGWRPRGGLGIPLLPGDGANKQPGANPPIPPEVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPV

Query:  ATQGGKQKARVFALTKEEAEDTDAVV
        +TQG  Q+ARVFALT++EA D + VV
Subjt:  ATQGGKQKARVFALTKEEAEDTDAVV

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]1.4e-0746.99Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARIC----PSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P        PCW G+KICFKC KEGH+ R C     + +  S   PT+     ATQGG Q ARVFALT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARIC----PSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

TrEMBL top hitse value%identityAlignment
A0A6J1D5J7 uncharacterized protein LOC1110178101.0e-0848.78Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P      V PCW G++ICFKC KEGH+AR CP   S  +A   K  + A   A QGG  +ARVFALT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

A0A6J1D9H1 uncharacterized protein LOC1110181438.9e-0844.3Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P        PCW G+ ICFKC KEGH+AR CP     +           ATQGG Q+AR+F LT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

A0A6J1DQB9 Reverse transcriptase6.8e-0846.99Show/hide
Query:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARIC----PSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PP+ P        PCW G+KICFKC KEGH+ R C     + +  S   PT+     ATQGG Q ARVFALT+ + E  +AVV
Subjt:  PPIPP-----EVPPCWSGQKICFKCGKEGHYARIC----PSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

A0A6J1DR22 uncharacterized protein LOC1110230351.4e-0852.17Show/hide
Query:  PCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV
        PCW G++ICF+C KEGH+AR CP   S  +A   K  + A   A QGG Q+ARVFALT+ + E  +AVV
Subjt:  PCWSGQKICFKCGKEGHYARICP---SQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV

A0A6J1DUM2 uncharacterized protein LOC1110232472.3e-0836.51Show/hide
Query:  SPLSPLSLSSCDPRQPPSSIPRTMLPRGWRPRGGLGIPLLPGDGANKQPGANPPIPPEVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPV
        SPL  +  SS   R+ PS+    +L    R     G+P +      +  G           CW+G K CF+CG+EGH+AR CP     +         PV
Subjt:  SPLSPLSLSSCDPRQPPSSIPRTMLPRGWRPRGGLGIPLLPGDGANKQPGANPPIPPEVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPV

Query:  ATQGGKQKARVFALTKEEAEDTDAVV
        +TQG  Q+ARVFALT++EA D + VV
Subjt:  ATQGGKQKARVFALTKEEAEDTDAVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCTTTCCCTCTCCCGTCCCCCTGTTCTCTCTTCCTCTCCCCCGATCCCCCTCACCGATCTCTCCCGCCGTCCTCTCTCCCCATCGCTGATCTCTCTCTTCCGC
CGCACTCTCTCCCCCTCTCGCGATCTCCCTCTCTCGCCGATCTCCCCTCTCTCGCCGCTCTCACTCTCCTCTTGTGACCCACGCCAACCCCCGTCGTCTATCCCC
CGCACGATGCTGCCACGTGGATGGAGACCTAGAGGAGGCTTAGGCATACCTCTGCTTCCCGGTGACGGAGCCAACAAACAGCCAGGGGCGAACCCTCCCATCCCT
CCAGAAGTTCCCCCATGTTGGTCAGGCCAGAAGATTTGCTTCAAATGTGGAAAGGAAGGTCACTATGCAAGGATTTGCCCAAGTCAAAGGGAGGCTAGCGCAAAC
AAGCCGACCTCGAAGGCCCTACCAGTAGCTACTCAAGGAGGAAAACAAAAGGCGCGCGTCTTTGCACTGACCAAAGAGGAGGCTGAGGATACAGACGCAGTGGTT
mRNA sequenceShow/hide mRNA sequence
AACCTTTCCCTCTCCCGTCCCCCTGTTCTCTCTTCCTCTCCCCCGATCCCCCTCACCGATCTCTCCCGCCGTCCTCTCTCCCCATCGCTGATCTCTCTCTTCCGC
CGCACTCTCTCCCCCTCTCGCGATCTCCCTCTCTCGCCGATCTCCCCTCTCTCGCCGCTCTCACTCTCCTCTTGTGACCCACGCCAACCCCCGTCGTCTATCCCC
CGCACGATGCTGCCACGTGGATGGAGACCTAGAGGAGGCTTAGGCATACCTCTGCTTCCCGGTGACGGAGCCAACAAACAGCCAGGGGCGAACCCTCCCATCCCT
CCAGAAGTTCCCCCATGTTGGTCAGGCCAGAAGATTTGCTTCAAATGTGGAAAGGAAGGTCACTATGCAAGGATTTGCCCAAGTCAAAGGGAGGCTAGCGCAAAC
AAGCCGACCTCGAAGGCCCTACCAGTAGCTACTCAAGGAGGAAAACAAAAGGCGCGCGTCTTTGCACTGACCAAAGAGGAGGCTGAGGATACAGACGCAGTGGTT
Protein sequenceShow/hide protein sequence
NLSLSRPPVLSSSPPIPLTDLSRRPLSPSLISLFRRTLSPSRDLPLSPISPLSPLSLSSCDPRQPPSSIPRTMLPRGWRPRGGLGIPLLPGDGANKQPGANPPIP
PEVPPCWSGQKICFKCGKEGHYARICPSQREASANKPTSKALPVATQGGKQKARVFALTKEEAEDTDAVV