CuGenDBv2

Gene ID	CcUC05G096180
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	CicolChr05:20919200..20925613
RNA-Seq Expression	CcUC05G096180
Synteny	CcUC05G096180
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]

3.1e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

3.1e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

3.1e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

3.1e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

3.1e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDX8 DNA-directed RNA polymerase subunit beta

1.5e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

1.5e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

A0A218KG28 DNA-directed RNA polymerase subunit beta

1.5e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta

1.5e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

X2F5U4 DNA-directed RNA polymerase subunit beta

1.5e-17

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

SwissProt top hits

e value

%identity

Alignment

A0ZZ27 DNA-directed RNA polymerase subunit beta

1.9e-17

84.31

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKK +MLYLSPSRDEYYMVA GNSLALN  IQEEQ+VPARY QEFLTI WE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

A6MM28 DNA-directed RNA polymerase subunit beta

1.1e-17

84.31

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPS+DEYYMVA GNSL+LN  IQEEQ+VPARY QEFLTI WE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

Q0ZJ28 DNA-directed RNA polymerase subunit beta

2.2e-18

88.24

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALN  IQEEQ+VPARY QEFLTI WE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

Q49L06 DNA-directed RNA polymerase subunit beta

3.8e-18

86.27

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYM+A GNSLALN  IQEEQ+VPARY QEFLTI WE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

Q4VZP1 DNA-directed RNA polymerase subunit beta

4.0e-20

94.12

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Query:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        SKKVRMLYLSPSRDEYYMVA GNSLALNP IQEEQIVPARY QEFLTIEWE
Subjt:  SKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

2.1e-16

77.55

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Query:  KVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE
        ++RML+LSPS+DEYYM+A GNSLALN  IQEEQ VPARY QEFLTI WE
Subjt:  KVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

Sequences

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CDS sequence

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ATGATGATTATCACAGAGAATCTTTCCTTTCGTCCTTCTGGCAAGGGTTTGAAGAGGGGCTTGGTAGCTAGGAAAGTCAAGTCAGGGAGGAAGGCGCTATACTATTGGGC
AAGTAGCGGTTGTAGTCTCGATTCAAAAAAAGTTCGGATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGATAGGAAATTCTTTGGCACTGAATCCAA
GTATTCAGGAAGAACAGATTGTTCCAGCTCGATACAGTCAAGAATTCTTGACTATTGAATGGGAATAG

mRNA sequence

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Protein sequence

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MMIITENLSFRPSGKGLKRGLVARKVKSGRKALYYWASSGCSLDSKKVRMLYLSPSRDEYYMVAIGNSLALNPSIQEEQIVPARYSQEFLTIEWE

CcUC05G096180 (gene) of Watermelon (PI 537277) v1 genome