; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G098070 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G098070
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionNuclear nucleic acid-binding protein C1D
Genome locationCicolChr05:26347889..26349603
RNA-Seq ExpressionCcUC05G098070
SyntenyCcUC05G098070
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0000178 - exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR011082 - Exosome-associated factor Rrp47/DNA strand repair C1D


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591524.1 Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7375.96Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRD AVVPEKVMDSVKTTL+NV  VQTHLIS LSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRKVHCRRTEP-----------------WISLWSVKTRFS
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK      +                   + LWS+K RF+
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRKVHCRRTEP-----------------WISLWSVKTRFS

Query:  CALNYPNS
        CALN PNS
Subjt:  CALNYPNS

XP_004145496.1 nuclear nucleic acid-binding protein C1D [Cucumis sativus]7.4e-7595.71Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLLARVTTTLFA +KLRCSGVHLDDHPIKSELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

XP_008452844.1 PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo]6.3e-7494.48Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

XP_022976264.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]1.8e-6888.96Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRD AVVPEKVMDSVKTTL+NV  VQTHLIS LSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

XP_038897508.1 nuclear nucleic acid-binding protein C1D [Benincasa hispida]9.1e-7394.48Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVK TLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLA+VTTTLFA +KLRCSGV LDDHPIKSELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

TrEMBL top hitse value%identityAlignment
A0A0A0L118 Nuclear nucleic acid-binding protein C1D3.6e-7595.71Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLLARVTTTLFA +KLRCSGVHLDDHPIKSELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

A0A1S3BUS6 Nuclear nucleic acid-binding protein C1D3.0e-7494.48Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

A0A5D3D8Y3 Nuclear nucleic acid-binding protein C1D3.0e-7494.48Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

A0A6J1F700 Nuclear nucleic acid-binding protein C1D1.9e-6888.34Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRD AVVPEKVMDSVKTTL+NV  VQTHLIS LSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +K+RCSGVH DDHPI +ELERLSLY+DKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

A0A6J1IN17 Nuclear nucleic acid-binding protein C1D8.6e-6988.96Show/hide
Query:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE
        MEG VRD AVVPEKVMDSVKTTL+NV  VQTHLIS LSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLE
Subjt:  MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLE

Query:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK
        RFIGLSK PLKRSTTLNYQAATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Subjt:  RFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK

SwissProt top hitse value%identityAlignment
Q32PE4 Nuclear nucleic acid-binding protein C1D2.4e-0728.12Show/hide
Query:  EGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLER
        EG   D+   P ++ + + T  +++G V   L + +S++  E+L ++ PL++A+  L+ A    ++F  V L   GV+  +HP+K ELER+ +Y ++++ 
Subjt:  EGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLER

Query:  FIGLSKAPLKRSTTLNYQAATRFIEHSL
                 K++  L+  AA+RF++++L
Subjt:  FIGLSKAPLKRSTTLNYQAATRFIEHSL

Q3KPR1 Nuclear nucleic acid-binding protein C1D3.7e-0829.6Show/hide
Query:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK
        P ++ + +    ++VG V   L   +S++  E+L +++PL++A+  L+ A    +LF  + L   G++  +HP+K ELER+  Y ++++          K
Subjt:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK

Query:  RSTTLNYQAATRFIEHSLPDLTQEQ
        ++  L+  AA RFI+H+L D T E+
Subjt:  RSTTLNYQAATRFIEHSLPDLTQEQ

Q5XJ97 Nuclear nucleic acid-binding protein C1D9.0e-0727.21Show/hide
Query:  EGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLER
        + AV D+   P ++ D++     ++  VQ  + + +S++  + L ++ PL++A+  L+ A    ++F  + L   GV+  DHPIK ELER+  Y +K++ 
Subjt:  EGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLER

Query:  FIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQK
             KA       ++ +AA+RF+ ++L D   +++
Subjt:  FIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQK

Q5ZHS3 Nuclear nucleic acid-binding protein C1D5.3e-0728.81Show/hide
Query:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK
        P ++ D + T   ++  V   L + +S++  E+L +++PL++A+  L+ A    ++F  V L   G++  +HP+K ELER+  Y +K++       A  K
Subjt:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK

Query:  RSTTLNYQAATRFIEHSL
        +++ L+  AA+RF+ ++L
Subjt:  RSTTLNYQAATRFIEHSL

Q7TSU0 Nuclear nucleic acid-binding protein C1D6.9e-0725.74Show/hide
Query:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK
        P ++ +S+     ++G V   L + +S++  E+L ++ PL++A+  L+ A    ++F  V L   GV+  +HP+K ELER+ +Y ++++          K
Subjt:  PEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLK

Query:  RSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGK
        ++  L+  AA+RF++++L +  Q+   ++ +  + K
Subjt:  RSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGK

Arabidopsis top hitse value%identityAlignment
AT5G25080.1 Sas10/Utp3/C1D family2.5e-3650.98Show/hide
Query:  VVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAP
        VVPE  +++V  TL  +  ++  L   L++AEPEVLA MQPLQRA++M LLA  TTTL+  ++LRC+GV  DDH +KSE+ER+++Y++K ++ +  SK P
Subjt:  VVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAP

Query:  LKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKR
        L+ +T LN QAATRFIEHSLPDLT  QK S+RD+S+G+ S+++  E + +K++
Subjt:  LKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACTAGTCCAAACTCACCTTATTTCCTTCCT
GTCTATCGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGA
GGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTG
AAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAA
GGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTT
GTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCATCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACTAGTCCAAACTCACCTTATTTCCTTCCT
GTCTATCGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGA
GGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTG
AAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAA
GGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTT
GTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCATCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA
Protein sequenceShow/hide protein sequence
MEGAVRDFAVVPEKVMDSVKTTLDNVGLVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPL
KRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRKVHCRRTEPWISLWSVKTRFSCALNYPNSRRLVHFEVGFGSSVFPFSPSPSFSLGH