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CcUC05G098470 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G098470
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA ligase
Genome locationCicolChr05:26876471..26876824
RNA-Seq ExpressionCcUC05G098470
SyntenyCcUC05G098470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4684.21Show/hide
Query:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN+Y+PFSFT K+KSSI CFR DHGDF E E  SSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP
XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]9.3e-4076.72Show/hide
Query:  MMLNEYN--PFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ NEYN  PFSFTHK+KSSI CFR DHGD  + ED +S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEYN--PFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP
XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]2.7e-4784.35Show/hide
Query:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y+PFSFT K+KSSI CFR DHGDF E E  SSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP
XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]5.4e-4884.35Show/hide
Query:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLNEY+PFSFT K+KSSIRCFR DH DF E+ED SSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP
XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]1.6e-4785.09Show/hide
Query:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF
        MLN+Y+PFSFT K+KSSI CFR DHGDF E ED SSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDEF
Subjt:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEF

Query:  PIRDFTSRLPASPP
        PIRDF SRLPASPP
Subjt:  PIRDFTSRLPASPP
TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein2.5e-3875Show/hide
Query:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSP-LKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDD
        M N YNPFSFTHK+KS I CFRPDH    + E + +P++P SP LKSM S+LPELR MCR+LVAR S  SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSP-LKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDFTSRLPASPP
Subjt:  EFPIRDFTSRLPASPP
A0A5A7VBS3 DNA ligase2.3e-3674.36Show/hide
Query:  MLNEYNPFSFTHKIKSSI-RCFRPDH-GDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M N YNPFSFTHK+KSSI  CFRPDH  +  E ED          LKSM S+LPELR MCR+LVAR S  SRRRYHHSADFRYDPSSYALNFEDEQ+RDD
Subjt:  MLNEYNPFSFTHKIKSSI-RCFRPDH-GDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFS-RSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASPP
        +EFPIRDFTSRLPASPP
Subjt:  DEFPIRDFTSRLPASPP
A0A6J1CC83 uncharacterized protein LOC1110093864.5e-4076.72Show/hide
Query:  MMLNEYN--PFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD
        M+ NEYN  PFSFTHK+KSSI CFR DHGD  + ED +S  +PRSPLKS ASE  ELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEYN--PFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDD

Query:  DEFPIRDFTSRLPASP
        D+FPIRDF SRLPASP
Subjt:  DEFPIRDFTSRLPASP
A0A6J1FP70 uncharacterized protein LOC1114460221.3e-4784.35Show/hide
Query:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLN+Y+PFSFT K+KSSI CFR DHGDF E E  SSP TPRSPLKSMA+E PELR MCRNLVAR  RSRRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP
A0A6J1J1H3 uncharacterized protein LOC1114804172.6e-4884.35Show/hide
Query:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE
        MMLNEY+PFSFT K+KSSIRCFR DH DF E+ED SSP TPRSPLKSMA+E PE+R MCRNLVAR  R RRRYHHSADFRYDPSSYALNFEDEQ+RDDDE
Subjt:  MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G48020.1 unknown protein2.3e-0442.86Show/hide
Query:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA
        +  + RF+R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  + P A
Subjt:  RNLVARFSRSRRR---YHHSADFRYDPSSYALNFEDEQIRDDDEF---PIRDFTSRLPASPPA
AT5G11070.1 unknown protein2.8e-1045.83Show/hide
Query:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK
        TPRSP   LKS A EL ELR+ CR + +R           ++     +HHS     DF YDP SYALNFED  +R DD+    +FT+RLP SP  K
Subjt:  TPRSP---LKSMASELPELREMCRNLVAR-----------FSRSRRRYHHS----ADFRYDPSSYALNFEDEQIRDDDEFPIRDFTSRLPASPPAK
AT5G35090.1 unknown protein9.0e-0935.82Show/hide
Query:  SFTHKIKSSI---RCFR-PDHGDFDETED--YSSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP
        S   K+KS      CFR  +H   D   D   SSP T     +S     M ++ P L        E C++L+ R            +    H+ADF YDP
Subjt:  SFTHKIKSSI---RCFR-PDHGDFDETED--YSSPTTPRSPLKS-----MASELPEL-------REMCRNLVARF--------SRSRRRYHHSADFRYDP

Query:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA
        SSYALNF+     D+ D FP+R+F++RLP SPP+
Subjt:  SSYALNFEDEQIRDD-DEFPIRDFTSRLPASPPA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGAACGAGTACAATCCATTTTCATTCACTCACAAGATCAAATCCTCAATCCGTTGTTTTCGCCCCGATCATGGCGATTTCGACGAAACCGAAGACTAT
TCTTCTCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTCGTCGCTCGGTTCAGCCGGAGTCGC
CGACGGTATCATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGAT
TTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGAACGAGTACAATCCATTTTCATTCACTCACAAGATCAAATCCTCAATCCGTTGTTTTCGCCCCGATCATGGCGATTTCGACGAAACCGAAGACTAT
TCTTCTCCAACAACTCCTAGATCGCCTCTCAAATCAATGGCGTCAGAGCTCCCGGAGCTCCGGGAAATGTGCCGGAATCTCGTCGCTCGGTTCAGCCGGAGTCGC
CGACGGTATCATCACTCCGCCGATTTCCGATACGATCCTTCGAGTTATGCCCTTAATTTCGAGGACGAACAGATTCGTGACGATGATGAGTTTCCGATTAGGGAT
TTCACTTCGAGATTACCGGCGTCGCCGCCAGCGAAATGA
Protein sequenceShow/hide protein sequence
MMLNEYNPFSFTHKIKSSIRCFRPDHGDFDETEDYSSPTTPRSPLKSMASELPELREMCRNLVARFSRSRRRYHHSADFRYDPSSYALNFEDEQIRDDDEFPIRD
FTSRLPASPPAK