CuGenDBv2

Gene ID	CcUC05G100140
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Sensory box/GGDEF family protein
Genome location	CicolChr05:28512630..28515484
RNA-Seq Expression	CcUC05G100140
Synteny	CcUC05G100140
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

GER44756.1 sensory box/GGDEF family protein [Striga asiatica]

3.2e-16

33.15

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Query:  SEFPPLERVLS--LSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEIIDTDWTSLPWRSAGRLSHSTVIFLSPTLSVSINSTKVFHPRK
        SEFP   R +S  L G  RGEAGRKAL  AE   P  PSNCKG  G P   A LE +++ T                                       
Subjt:  SEFPPLERVLS--LSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEIIDTDWTSLPWRSAGRLSHSTVIFLSPTLSVSINSTKVFHPRK

Query:  RSPTFLKFSYSTPIHRQIPQTGASLADSSPFAASKPSKTVPGSCMGECKELSDFSVTHDLPQEPSILLTWFSSSGDSFNFFEPPANCSLSLPSLA-AAGK
                     I R +     S   S P      S+               FS   DL      LL   S SG      E      L   S A  AG+
Subjt:  RSPTFLKFSYSTPIHRQIPQTGASLADSSPFAASKPSKTVPGSCMGECKELSDFSVTHDLPQEPSILLTWFSSSGDSFNFFEPPANCSLSLPSLA-AAGK

Query:  LQATLTEVPPPTEPRDVSSFFKTSSVGTNI---------TAGLLTVNK----IPEEID--FSAVICSFLSACNKTMIDSS----------TLSPSNWIKR
        L +T              S F TSS+   +         T  LL + K    +   +D   S    S   AC++   DSS             PS W+KR
Subjt:  LQATLTEVPPPTEPRDVSSFFKTSSVGTNI---------TAGLLTVNK----IPEEID--FSAVICSFLSACNKTMIDSS----------TLSPSNWIKR

Query:  SRQSLFSVAAIAPATAAQCLVASLTFFTKQSFSFCITLINSSTLHGAVSPFFISVKVKKSSSVIM
        SR S FSVA IA  TA  CLVAS TFFT   F FC+T  +S T  GAVSP FISVKVKKSSSVI+
Subjt:  SRQSLFSVAAIAPATAAQCLVASLTFFTKQSFSFCITLINSSTLHGAVSPFFISVKVKKSSSVIM

TQD76741.1 hypothetical protein C1H46_037730 [Malus baccata]

3.5e-07

60.34

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Query:  ELSEFPPLERVLSLSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEI
        ELS   P+E+ LS S  LRG+A RKAL AA+P+HP APSNCK   G P  A GLET I
Subjt:  ELSEFPPLERVLSLSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEI

TrEMBL top hits

e value

%identity

Alignment

A0A540KR87 Uncharacterized protein

1.7e-07

60.34

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Query:  ELSEFPPLERVLSLSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEI
        ELS   P+E+ LS S  LRG+A RKAL AA+P+HP APSNCK   G P  A GLET I
Subjt:  ELSEFPPLERVLSLSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEI

A0A5A7QII5 Sensory box/GGDEF family protein

1.5e-16

33.15

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Query:  SEFPPLERVLS--LSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEIIDTDWTSLPWRSAGRLSHSTVIFLSPTLSVSINSTKVFHPRK
        SEFP   R +S  L G  RGEAGRKAL  AE   P  PSNCKG  G P   A LE +++ T                                       
Subjt:  SEFPPLERVLS--LSGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEIIDTDWTSLPWRSAGRLSHSTVIFLSPTLSVSINSTKVFHPRK

Query:  RSPTFLKFSYSTPIHRQIPQTGASLADSSPFAASKPSKTVPGSCMGECKELSDFSVTHDLPQEPSILLTWFSSSGDSFNFFEPPANCSLSLPSLA-AAGK
                     I R +     S   S P      S+               FS   DL      LL   S SG      E      L   S A  AG+
Subjt:  RSPTFLKFSYSTPIHRQIPQTGASLADSSPFAASKPSKTVPGSCMGECKELSDFSVTHDLPQEPSILLTWFSSSGDSFNFFEPPANCSLSLPSLA-AAGK

Query:  LQATLTEVPPPTEPRDVSSFFKTSSVGTNI---------TAGLLTVNK----IPEEID--FSAVICSFLSACNKTMIDSS----------TLSPSNWIKR
        L +T              S F TSS+   +         T  LL + K    +   +D   S    S   AC++   DSS             PS W+KR
Subjt:  LQATLTEVPPPTEPRDVSSFFKTSSVGTNI---------TAGLLTVNK----IPEEID--FSAVICSFLSACNKTMIDSS----------TLSPSNWIKR

Query:  SRQSLFSVAAIAPATAAQCLVASLTFFTKQSFSFCITLINSSTLHGAVSPFFISVKVKKSSSVIM
        SR S FSVA IA  TA  CLVAS TFFT   F FC+T  +S T  GAVSP FISVKVKKSSSVI+
Subjt:  SRQSLFSVAAIAPATAAQCLVASLTFFTKQSFSFCITLINSSTLHGAVSPFFISVKVKKSSSVIM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGGAAACCGCAGAGCTCATCCCTAGTATATCTCCTGTCCTTGCCAAAGTAGCACCCATTCCAGCAGGCTCGACAAGTCCCTCCATTCTCAAATCTGATGCTGGAGT
ATCAACATCGTCACCGACACAGTTAAGGTCCAGCTTTAGTCCCCCGGATCTTCTTTGTCCACTTTCAACTAAAAACTCTCCGGATTGTGGGAAAGATGATCCTAGGTTTT
GTTTCCTGGTTTCTTCTCCAGTCTCGGCCACATTCAAATCAATGTCAAGAAAATCCTGCCTCTGCTTTGAACTATCAGAATTTCCCCCGCTAGAAAGAGTTCTATCACTA
TCAGGAACTTTACGTGGGGAAGCAGGCCGGAAAGCACTAGTGGCTGCAGAGCCTCTCCATCCAAGCGCCCCTTCAAACTGCAAAGGTGTTAGAGGCAATCCAGAAGAAGC
AGCTGGTCTAGAAACAGAGATAATAGACACCGATTGGACCTCCCTTCCTTGGAGATCAGCTGGCAGACTTAGTCATTCCACCGTCATCTTCCTTTCTCCGACGTTGTCTG
TCTCCATTAACTCGACCAAAGTCTTCCATCCTCGAAAAAGAAGCCCCACGTTCCTCAAGTTTTCCTATTCGACTCCCATTCATAGACAAATCCCGCAGACTGGAGCTTCT
TTAGCAGACTCTTCACCGTTTGCAGCGTCGAAACCTTCCAAAACAGTTCCAGGATCTTGCATGGGAGAATGCAAAGAGTTATCTGATTTCTCTGTCACACATGACCTACC
ACAAGAGCCATCAATCTTACTCACTTGGTTTTCAAGCTCTGGTGACTCATTCAACTTCTTTGAACCACCAGCTAATTGTTCATTATCGCTACCTTCTCTTGCAGCAGCTG
GAAAGCTACAAGCCACACTAACTGAGGTTCCACCTCCAACAGAACCAAGAGATGTTTCTTCCTTCTTCAAAACATCGTCGGTTGGGACCAACATAACAGCAGGACTCTTA
ACAGTAAACAAAATCCCAGAAGAAATAGATTTCTCAGCAGTTATATGTAGCTTTTTAAGTGCTTGTAACAAAACAATGATAGACTCTTCCACGCTTAGTCCATCTAATTG
GATAAAAAGATCAAGACAATCTTTATTCTCCGTAGCAGCAATAGCACCTGCAACAGCAGCCCAGTGCCTAGTTGCATCACTAACATTCTTCACAAAACAATCCTTCTCCT
TTTGCATAACATTGATCAACTCTTCAACTCTACATGGGGCTGTAAGCCCATTTTTTATTTCAGTCAAGGTGAAGAAGTCTTCAAGTGTCATCATGCTTCATATACCATCC
TTGAGAGCATGA

mRNA sequence

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Protein sequence

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MAETAELIPSISPVLAKVAPIPAGSTSPSILKSDAGVSTSSPTQLRSSFSPPDLLCPLSTKNSPDCGKDDPRFCFLVSSPVSATFKSMSRKSCLCFELSEFPPLERVLSL
SGTLRGEAGRKALVAAEPLHPSAPSNCKGVRGNPEEAAGLETEIIDTDWTSLPWRSAGRLSHSTVIFLSPTLSVSINSTKVFHPRKRSPTFLKFSYSTPIHRQIPQTGAS
LADSSPFAASKPSKTVPGSCMGECKELSDFSVTHDLPQEPSILLTWFSSSGDSFNFFEPPANCSLSLPSLAAAGKLQATLTEVPPPTEPRDVSSFFKTSSVGTNITAGLL
TVNKIPEEIDFSAVICSFLSACNKTMIDSSTLSPSNWIKRSRQSLFSVAAIAPATAAQCLVASLTFFTKQSFSFCITLINSSTLHGAVSPFFISVKVKKSSSVIMLHIPS
LRA

CcUC05G100140 (gene) of Watermelon (PI 537277) v1 genome