; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G100960 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G100960
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein RADIALIS-like 3
Genome locationCicolChr05:29213941..29214943
RNA-Seq ExpressionCcUC05G100960
SyntenyCcUC05G100960
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]5.2e-3996.59Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]5.2e-3996.59Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]5.3e-3693.1Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]2.8e-3794.38Show/hide
Query:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRG
Subjt:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]4.2e-3388.37Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG
        MASSS T+  GFYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein2.5e-3996.59Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

A0A1S3CRN8 protein RADIALIS-like 42.5e-3996.59Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

A0A5A7TE80 Protein RADIALIS-like 32.5e-3996.59Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTST GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

A0A6J1DP29 protein RADIALIS-like 42.6e-3693.1Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR
        MASSSVTS RGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDV+KIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 31.4e-3794.38Show/hide
Query:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG
        MASSSVTS  RGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRG
Subjt:  MASSSVTS-TRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.4e-1756.18Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGR
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGR

Q1G3C4 Protein RADIALIS-like 46.4e-1656.79Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

Q58FS3 Transcription factor RADIALIS1.1e-1553.75Show/hide
Query:  VTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN
        + STRG    W+ KENK FE ALA YD+DTPDR+  VARAV  G+T EE ++ YE+LV D++ IE+G+V  P Y+  G N
Subjt:  VTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN

Q6NNN0 Protein RADIALIS-like 31.8e-1861.18Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCN

Q9SIJ5 Protein RADIALIS-like 22.0e-1758.24Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRGNV
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG +
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRGNV

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.0e-1653.33Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRG
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK--NAGCNGRG

AT1G75250.1 RAD-like 67.7e-1747.52Show/hide
Query:  TSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG-NVF-TRLLTSHFNILYN
        +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R  N F TR +T +  ++ +
Subjt:  TSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRG-NVF-TRLLTSHFNILYN

Query:  I
        I
Subjt:  I

AT2G18328.1 RAD-like 44.5e-1756.79Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.4e-1858.24Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRGNV
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD+  IE G V  P YK   G + RG +
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYK-NAGCNGRGNV

AT4G39250.1 RAD-like 13.1e-1856.18Show/hide
Query:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGR
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR
Subjt:  MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAG--CNGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTGTCACATCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGAAATGTATTCACCAGACTACTAACTTCGCATTTCAACATTTTATACAACATCGCACTTGGAACTTCA
GTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATCAAGTTAAAAAGGGAGAAGTGGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTGTCACATCGACACGTGGCTTTTACTCATCCTGGACAAAAAAGGAAAACAAGAAATTTGAGGAAGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCTGAGGAAGCAAGAAGGCTCTATGAGCTACTAGTGCGAGATGTCAGAAAAATAGAAGCTGGTCAAG
TCCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGAAATGTATTCACCAGACTACTAACTTCGCATTTCAACATTTTATACAACATCGCACTTGGAACTTCA
GTTTCCTTTGAAGTAGATCAAGCGAAGAATCTGAAAATCAAGTTAAAAAGGGAGAAGTGGTATTAAATACTAATACACCATTAGGCAGTATGATTAGGAATGAGTACGTT
AAGGTGCATGAGAAGCCCTGCCTATCATCTGAGTCACAGAAAAATGTTGATAACGGGTTATTGCAAATCTTAAGACAGGATTTATCGTAAATAACGCTCTAGAATAGACC
TTGAAGGTTCAAAACTTGTCCACGTATCCCTCAAATGCATCCCTTCTTTTTCTAGTGGCTACCACTTGACTAAAATGGCGGGCATTCCCCTGGTCCAATGCAGATCTATC
TCTTGAGCCTGTGACTACGTAATTTTCTAACATTTTCCATTATCCATTCGTATATTCAACTTTCAAAGCAGCCCACATGATATCCAATCTCAAATGCACACGATCCCATA
ATTTGGAATCCAGACCCC
Protein sequenceShow/hide protein sequence
MASSSVTSTRGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGNVFTRLLTSHFNILYNIALGTS
VSFEVDQAKNLKIKLKREKWY