; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC05G106940 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G106940
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTubulin alpha chain
Genome locationCicolChr05:33998713..34017492
RNA-Seq ExpressionCcUC05G106940
SyntenyCcUC05G106940
Gene Ontology termsGO:0000226 - microtubule cytoskeleton organization (biological process)
GO:0000278 - mitotic cell cycle (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005200 - structural constituent of cytoskeleton (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR000217 - Tubulin
IPR002452 - Alpha tubulin
IPR003008 - Tubulin/FtsZ, GTPase domain
IPR036525 - Tubulin/FtsZ, GTPase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EYU34086.1 hypothetical protein MIMGU_mgv1a0196711mg, partial [Erythranthe guttata]4.8e-4287.23Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTT+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

VAH94831.1 unnamed protein product [Triticum turgidum subsp. durum]1.6e-4285.42Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYTPW
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT W
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYTPW

XP_004150268.1 tubulin alpha chain isoform X1 [Cucumis sativus]2.1e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

XP_011652904.1 tubulin alpha chain isoform X2 [Cucumis sativus]2.1e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

XP_012841365.1 PREDICTED: tubulin alpha chain [Erythranthe guttata]4.8e-4287.23Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTT+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

TrEMBL top hitse value%identityAlignment
A0A0A0KWB5 Tubulin alpha chain1.0e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

A0A446R7K0 Tubulin domain-containing protein7.9e-4385.42Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYTPW
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT W
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYTPW

A0A5A7TSF5 Tubulin alpha chain1.0e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

A0A6J1D6Q0 Tubulin alpha chain1.0e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

E5GBH5 Tubulin alpha chain1.0e-4288.3Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGDTTLGGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

SwissProt top hitse value%identityAlignment
P29511 Tubulin alpha-6 chain3.1e-4486.17Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

P33629 Tubulin alpha chain3.1e-4486.17Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

P46259 Tubulin alpha-1 chain1.2e-4385.11Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTG YRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

Q96460 Tubulin alpha-2 chain1.2e-4385.11Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTG YRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

Q9ZRR5 Tubulin alpha-3 chain3.1e-4486.17Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

Arabidopsis top hitse value%identityAlignment
AT1G04820.1 tubulin alpha-4 chain1.1e-4485.11Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMP D T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

AT1G50010.1 tubulin alpha-2 chain1.1e-4485.11Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMP D T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

AT4G14960.1 Tubulin/FtsZ family protein2.2e-4586.17Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

AT4G14960.2 Tubulin/FtsZ family protein2.2e-4586.17Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V NACW+LY LEHGIQPDGQMPGD T+GGG+DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT

AT5G19770.1 tubulin alpha-31.0e-4281.91Show/hide
Query:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT
        V N+CW+LY LEHGIQPDG MP DTT+G  +DAFNTF SETGAGKHVP A+FVDL+PTVIDEVRTGTYRQLFHPEQLISGKE+AANNFA  HYT
Subjt:  VPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQPTVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCGCTCAAAGTAGATACAGTAGGGATTGATCTTGGCCTTTCCAATAATGTACCATACTTCTCACTGCCTATCCTTCCAGCAACTTCATTTAAAACCATGTATGG
ACTCATGGGTGATGATGGTGAGGAATTCAATGAAATCACAGATGGAATAGAAGTGGATGAAGCTGGAGCAAGAACCGTCATGTATTGCTGGAGACTTGATGCTTCAAACC
TGAACGGGAAGATGCATCAGCCTCCTCGTCACTATCATCAACAACCGAATATTGTGGAAATGGATCTTCAAAAATCAGACCTTCCAAAGTTACCGCTGGCTTTGGCGCGT
AATAGGCAGCTGGAGGAGGAGTTTCTTGAACAGATGGCCGCTCTGGAGGCACGATCCAGTGGTGGCGGAGCACCGGACATAAGGAAAACGGTGGCCGGGCCTGACATAAT
TTCTCACCCCGGCACCAATGGGCCATTTGATATGGGCTGGGCTTTACTTGTCCCCAATGCCTGCTGGGACCTCTACTACCTCGAGCATGGTATTCAACCCGATGGCCAAA
TGCCAGGAGACACTACTCTTGGTGGAGGTAACGATGCTTTCAACACCTTTCTTAGTGAAACTGGTGCTGGAAAGCATGTTCCCCTTGCTATTTTTGTTGATCTTCAGCCT
ACTGTCATCGATGAGGTGAGGACTGGAACTTACCGCCAACTCTTCCACCCTGAACAGCTGATCAGTGGCAAGGAAGAAGCTGCCAATAATTTTGCTTGTGCTCACTACAC
CCCATGGGGGCATCAACAGTTAGCTCGTGATCCACCTCCTCCCAAATCCCGCTTTTGTTTTGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCGCTCAAAGTAGATACAGTAGGGATTGATCTTGGCCTTTCCAATAATGTACCATACTTCTCACTGCCTATCCTTCCAGCAACTTCATTTAAAACCATGTATGG
ACTCATGGGTGATGATGGTGAGGAATTCAATGAAATCACAGATGGAATAGAAGTGGATGAAGCTGGAGCAAGAACCGTCATGTATTGCTGGAGACTTGATGCTTCAAACC
TGAACGGGAAGATGCATCAGCCTCCTCGTCACTATCATCAACAACCGAATATTGTGGAAATGGATCTTCAAAAATCAGACCTTCCAAAGTTACCGCTGGCTTTGGCGCGT
AATAGGCAGCTGGAGGAGGAGTTTCTTGAACAGATGGCCGCTCTGGAGGCACGATCCAGTGGTGGCGGAGCACCGGACATAAGGAAAACGGTGGCCGGGCCTGACATAAT
TTCTCACCCCGGCACCAATGGGCCATTTGATATGGGCTGGGCTTTACTTGTCCCCAATGCCTGCTGGGACCTCTACTACCTCGAGCATGGTATTCAACCCGATGGCCAAA
TGCCAGGAGACACTACTCTTGGTGGAGGTAACGATGCTTTCAACACCTTTCTTAGTGAAACTGGTGCTGGAAAGCATGTTCCCCTTGCTATTTTTGTTGATCTTCAGCCT
ACTGTCATCGATGAGGTGAGGACTGGAACTTACCGCCAACTCTTCCACCCTGAACAGCTGATCAGTGGCAAGGAAGAAGCTGCCAATAATTTTGCTTGTGCTCACTACAC
CCCATGGGGGCATCAACAGTTAGCTCGTGATCCACCTCCTCCCAAATCCCGCTTTTGTTTTGTTTTCTAA
Protein sequenceShow/hide protein sequence
MYSLKVDTVGIDLGLSNNVPYFSLPILPATSFKTMYGLMGDDGEEFNEITDGIEVDEAGARTVMYCWRLDASNLNGKMHQPPRHYHQQPNIVEMDLQKSDLPKLPLALAR
NRQLEEEFLEQMAALEARSSGGGAPDIRKTVAGPDIISHPGTNGPFDMGWALLVPNACWDLYYLEHGIQPDGQMPGDTTLGGGNDAFNTFLSETGAGKHVPLAIFVDLQP
TVIDEVRTGTYRQLFHPEQLISGKEEAANNFACAHYTPWGHQQLARDPPPPKSRFCFVF