; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC06G110330 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G110330
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description60S ribosomal protein L38
Genome locationCicolChr06:867476..874356
RNA-Seq ExpressionCcUC06G110330
SyntenyCcUC06G110330
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]3.3e-5362.5Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG
        +PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP                  ++++L N+ +          
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG

Query:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
                          G +     +     PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP    + L
Subjt:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.8e-5162.89Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY
        PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP                             +VA       
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY

Query:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
                       G  +M+   +L+    PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL
Subjt:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]3.0e-5464.43Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG
        +PKQIHEIKDFLLTARRKDARSVKI R KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP           +GY ++ +     N  M +    +  G
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG

Query:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
          + ++S      +   P   ++   +  +  PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]2.5e-5362.63Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQI---ISLANKTMS-IVAND
        +PKQIHEIKDFLLTARRKDARSVKI R KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP       +   +GY ++ +    + +  +T+   +A+ 
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQI---ISLANKTMS-IVAND

Query:  YDFGYDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
            Y  +  S ++                 +    PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  YDFGYDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]9.7e-5363.92Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY
        PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP    ++       Y I+D                     
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY

Query:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
                            I CW      +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein2.4e-4957Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG
        +PKQIHEIKDFLLTARRKDARSV+I R+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPP                                      
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG

Query:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
                                   +   +PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPGL+VQE+
Subjt:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

A0A103XQP8 Ribosomal protein L38e (Fragment)4.7e-5363.92Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY
        PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP    ++       Y I+D                     
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY

Query:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL
                            I CW      +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG+
Subjt:  DDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL

A0A498I9U8 Uncharacterized protein2.3e-3657.06Show/hide
Query:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG
        LPKQIHEIKDFLLTARRKDARSVKI ++KD VKFKV CSKYLYTLCVFDS+KADKLKQSLPP       NFA+  +   +Q+ S  +  +++        
Subjt:  LPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFG

Query:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
          +V++ + L D L  G    +          PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  YDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein1.7e-3954.36Show/hide
Query:  GLPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---DTCFNYFNFAHLGYQIIDQIISLANKTMSIVAND
        G PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLPP    +C     +   G   +      A++  +   ++
Subjt:  GLPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP---DTCFNYFNFAHLGYQIIDQIISLANKTMSIVAND

Query:  YDFGYDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
           G+                              +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  YDFGYDDVKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L384.7e-4553.28Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY
        PKQIHEIKDFLLTARRKDAR VKI +S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLPP                    +   N+  S    +    Y
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGY

Query:  DDVKISKILKDEL---ERGPGKMIKCWNLMD--KDKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKF
           K    +KD L    R   + +K     D  K KPKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKF
Subjt:  DDVKISKILKDEL---ERGPGKMIKCWNLMD--KDKPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKF

Query:  KVRCSKYLYTLCVFDSEKADKLKQSLPPG
        KVRCSKYLYTL V D EKADKLKQSLPPG
Subjt:  KVRCSKYLYTLCVFDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.2e-2994.12Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQ+L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

P46291 60S ribosomal protein L381.5e-2789.71Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQ+L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

P63173 60S ribosomal protein L384.9e-2377.94Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+EL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

Q32PB9 60S ribosomal protein L384.9e-2377.94Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+EL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

Q95V84 60S ribosomal protein L383.0e-2583.82Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V+EL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family8.5e-3194.12Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQ+L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL

AT3G59540.1 Ribosomal L38e protein family8.5e-3194.12Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQ+L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTTCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTATGAGGAGCAAAGATGTGGTGAAG
TTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTCTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATACATGTTTCAATTAT
TTTAACTTTGCTCATCTTGGCTATCAAATCATCGATCAAATCATTTCTTTGGCTAACAAGACAATGTCAATTGTTGCCAATGATTATGATTTCGGTTATGATGAC
GTGAAGATTTCCAAGATCCTCAAAGACGAATTAGAAAGAGGTCCTGGTAAAATGATCAAATGTTGGAACCTCATGGATAAGGATAAGCCGAAACAAATTCACGAG
ATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAAAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTT
TATACTCTTTGTGTCTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGAACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTTCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTATGAGGAGCAAAGATGTGGTGAAG
TTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTCTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGATACATGTTTCAATTAT
TTTAACTTTGCTCATCTTGGCTATCAAATCATCGATCAAATCATTTCTTTGGCTAACAAGACAATGTCAATTGTTGCCAATGATTATGATTTCGGTTATGATGAC
GTGAAGATTTCCAAGATCCTCAAAGACGAATTAGAAAGAGGTCCTGGTAAAATGATCAAATGTTGGAACCTCATGGATAAGGATAAGCCGAAACAAATTCACGAG
ATCAAAGATTTCCTTCTCACTGCTAGAAGGAAAGATGCTCGTTCTGTGAAAATTAAAAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAATATCTT
TATACTCTTTGTGTCTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGAACTGTGAAAGAATGGTTAAAGTCTCAAA
TGATCACAAGAATGAGAACTAGATTTTTTGTATGATGTTTTTTTTTGCCAACTATTTAGAATACAACTAAATTGGATTTGAGCTTATAGTAATCCATATTTGTCT
TCGTTTTCCAGTGGATTGGTTGATATTTAGAATTGTTATGTTGAATCATGTGAGTTGATGTTTTCATTAAATTTATGGCTACTCCCGCAGTGTTTCTAACGAATG
GTGGATTTGATGATATGCACAACCTTTT
Protein sequenceShow/hide protein sequence
MGLPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPDTCFNYFNFAHLGYQIIDQIISLANKTMSIVANDYDFGYDD
VKISKILKDELERGPGKMIKCWNLMDKDKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQEL