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CcUC06G110450 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G110450
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTrigger_N domain-containing protein
Genome locationCicolChr06:984932..987462
RNA-Seq ExpressionCcUC06G110450
SyntenyCcUC06G110450
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0015031 - protein transport (biological process)
GO:0043335 - protein unfolding (biological process)
GO:0051083 - 'de novo' cotranslational protein folding (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0044183 - protein folding chaperone (molecular function)
InterPro domainsIPR005215 - Trigger factor
IPR036611 - Trigger factor ribosome-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460020.1 PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]3.2e-3178Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

XP_011656737.1 uncharacterized protein LOC101212225 [Cucumis sativus]1.2e-3076Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN
        GKTSNVPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

XP_022155406.1 uncharacterized protein LOC111022553 [Momordica charantia]6.7e-2975Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS
        GKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS

XP_023004174.1 uncharacterized protein LOC111497577 [Cucurbita maxima]1.3e-2771.7Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------S
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------S

Query:  GSDGEN
         S+ EN
Subjt:  GSDGEN

XP_038906537.1 uncharacterized protein LOC120092511 [Benincasa hispida]5.0e-3280Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN
        GKTSNVPKSFLLEVLGKDRV KFVIQEILNSTMADYAKK                ENINVKDKKVNTTQTADELKVLFSPGK+FGFNAILELES SD EN
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

TrEMBL top hitse value%identityAlignment
A0A0A0K988 Trigger_N domain-containing protein5.9e-3176Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN
        GKTSNVPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENINVKDKKV+TTQTADELKVLF+PGK+FGFNAILELES SD E+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

A0A1S3CBN2 uncharacterized protein LOC1034989591.6e-3178Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENINVKD KVNTTQTADELKVLF+PGK+FGFNAILELES SD E+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDGEN

A0A6J1DRL2 uncharacterized protein LOC1110225533.3e-2975Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS
        GKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN+NVKDKKVNTTQTADELK+LF+PGK+FGFNAILELES +
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS

A0A6J1H8V8 uncharacterized protein LOC1114611151.4e-2769.44Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL--------EL
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTM DYAKK                ENI VKDK VNTTQT DELK LF PGK+FGFNAIL        EL
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAIL--------EL

Query:  ESGSDGEN
        ES S+GEN
Subjt:  ESGSDGEN

A0A6J1KVH6 uncharacterized protein LOC1114975776.2e-2871.7Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------S
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELE------S

Query:  GSDGEN
         S+ EN
Subjt:  GSDGEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).4.4e-1034.38Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS
        GKT N+PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K++   Q+ ++L+  F PG+ F F+A ++L+  S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).4.4e-1034.38Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS
        GKT N+PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K++   Q+ ++L+  F PG+ F F+A ++L+  S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTGGATGCTTTGCCAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACGAAGTTTGTCATACAAGAAATA
TTGAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAGTGCCTACGTGGAAAACATAAATGTAAAGGACAAG
AAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGGT
GAAAATTGA
mRNA sequenceShow/hide mRNA sequence
TTTTTAATTAAATTTTAAGAATCAATTTTGTTAATGGTATGAAATTACGAAAGAAGGGGGAAAAACCTACTCCAAATGAGACTCTCCAATTGGATATAAAAGAAG
CATGGGGAAAGAGATGAGAGAATTCACACTAAGAAATTGTCGTAAAAGCGATAGAAGAAAGCCCTTGTAAAGTGCATCCATAAGAGCTCTTTTTCTTAGTTGAAA
GGATGACCCCCAAAAACATACTAGAGGAGGAGGAGGAGATTTTGAGGGAGAGCTGTATGTCGACCACCCAAAGCATGATAGCTGCCCCCACAATTTTGATGCAAA
TTTGCAGGACACAGAAAGACCTTGAGACTTAGGAGCTGTCTATGCGCATGACACAAACTACTAGCCTTTGTTCAAGAAAATAATGCATCCTTGAGATACCACTGT
CTCAATATCTAATCGCTCACTCTCCCAATGCCACCTCACTTAGTTACAACTTCTGCCCACCAAAGTTGACAAACAATCTATTCTCAATGTAAGATTTTGTTAGGA
ATGTTAGCAGGGAACTATTTGGGATATTATTAGGTTATTTGGAGGGCATAGTTTGTTAGAAAAGAGATTATAAACGCAGTTGAATAGAGGGGTTTGAGATAGGCA
GAGGTTAGACATTTTGGGAGAGTCCACGCCTCTCAAAGTGTTTGGTTTTCGTAAATTTTCTATTATATGGGAATACAATTTAAGTGTTATTTTCGTACTTCCATT
TTCAATCAAGATTGGGTTCCTATCATCCTTCCCTTTATCATCCTTCCCTTTCATGTTTTCTTTGGAACGCATTTATTGTTAGTGACCTATAAAAAATGTCTAATG
AAATATTATTGACAGCTAAGAGTGGATTTGACTGGGGATGAGACACAAAAGGTATTTGATCAGGTTTTGACAAACTTAGCCCGTTCAGCACCACCAATGCCAGGA
TTTCGTAGGCAAAAAGGAGGTAGTACCACGATTTTCCTCCTCTTCCACCTCGAATGTTACAACCATTCATTCATTTGCAACATAAGTCTTGTACATGTTCACTAT
CCATGTAGACAAATATGGGAATTGAGAAGTGCCTTTCCTGTCCATATGCGTTCATATGTTTAGCTGCTTTTACAGCTTATAAGTTCTTCTTGTAGCAGATGACTT
GACTTTATATGGTTTCTAATGTTTTCCTGTCTTCATGCCCGTGGATGCTTTGCCAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAA
GGACCGAGTCACGAAGTTTGTCATACAAGAAATATTGAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAG
TGCCTACGTGGAAAACATAAATGTAAAGGACAAGAAGGTTAACACAACACAAACAGCAGATGAACTGAAAGTATTGTTTAGTCCAGGAAAAGATTTTGGTTTCAA
TGCCATACTTGAACTTGAATCTGGTTCAGATGGTGAAAATTGA
Protein sequenceShow/hide protein sequence
MPVDALPGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPSAYVENINVKDKKVNTTQTADELKVLFSPGKDFGFNAILELESGSDG
EN