CuGenDBv2

Gene ID	CcUC06G111180
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LITAF domain-containing protein
Genome location	CicolChr06:1800039..1802054
RNA-Seq Expression	CcUC06G111180
Synteny	CcUC06G111180
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

9.9e-70

90.98

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_022148974.1 GSH-induced LITAF domain protein [Momordica charantia]

8.9e-71

91.79

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPLY G+NAYQAGQIPSNAI+GDPQGVPI QTM+RDTPAPFYC+YCGNSGLT VRSKISSAAVVGCM PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

9.9e-70

91.04

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIP Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

1.3e-69

90.3

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIP Y GNN+YQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

1.1e-73

95.52

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPLYDGNN YQAGQIPSNAIFGDPQGVPI QTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK+DRCAVMDPP+WTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

4.8e-70

90.98

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

6.2e-70

90.98

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+PLY GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPF CVYCGNSGLT +RSKIS AAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A6J1D5M9 GSH-induced LITAF domain protein

4.3e-71

91.79

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPLY G+NAYQAGQIPSNAI+GDPQGVPI QTM+RDTPAPFYC+YCGNSGLT VRSKISSAAVVGCM PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1GS01 GSH-induced LITAF domain protein

4.8e-70

91.04

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Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIP Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein

6.2e-70

90.3

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIP Y GNN+YQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCM PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

2.1e-54

68.66

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+G+P Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT++RSK   AAVV CM PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.5e-55

68.66

Show/hide

Query:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+G+P Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT++RSK   AAVV CM PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Sequences

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CDS sequence

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ATGTCCAAGAACGACGAGCCGGTCGTCGGAATCCCACTTTACGACGGCAACAACGCCTATCAGGCCGGCCAGATCCCTTCCAACGCCATTTTTGGCGATCCCCAGGGGGT
TCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCCTTCTACTGTGTTTATTGTGGAAATTCCGGCCTCACCGACGTCAGATCAAAGATAAGTTCAGCCGCTGTTG
TTGGTTGTATGACGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCATTATTGCCCCAGCTGCAAGGAGAAGGTTGGTGAT
TTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTCGCACTGCCTGCTTGA

mRNA sequence

Show/hide mRNA sequence

TCGCCTTTTGACTTTGTATCAGGAAGGGCTTCTTCTCGTTTCCGTTTTCTCTCCCAAGTCCTCCAACAATTTTCATTTACTTCCATTCCAACAACTTTCTCAATCTCCGG
CAGAGCAGAAGAGATTACAAAGCTTACCGATAATGTCCAAGAACGACGAGCCGGTCGTCGGAATCCCACTTTACGACGGCAACAACGCCTATCAGGCCGGCCAGATCCCT
TCCAACGCCATTTTTGGCGATCCCCAGGGGGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCCTTCTACTGTGTTTATTGTGGAAATTCCGGCCTCACCGA
CGTCAGATCAAAGATAAGTTCAGCCGCTGTTGTTGGTTGTATGACGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCATT
ATTGCCCCAGCTGCAAGGAGAAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTCGCACTGCCTGCTTGATTT
TGATGAGCTGCTATTTTCCCGTGCCATATTATTTTGGATTGTCTGCAGTCAGTACTTGCGATAGTCTTGTGCTATTTTTGTGATGTTCTTGTTACACATAGGGATAGACA
AAGCGTGGATATCGGTGCATATACAATTGTGATAGAACCAAGTATATGTT

Protein sequence

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MSKNDEPVVGIPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMTPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGD
FEKLDRCAVMDPPHWTQPSFALPA

CcUC06G111180 (gene) of Watermelon (PI 537277) v1 genome