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CcUC06G111490 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G111490
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMADS-box transcription factor 8-like
Genome locationCicolChr06:2238205..2239056
RNA-Seq ExpressionCcUC06G111490
SyntenyCcUC06G111490
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2595.16Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR
        MGRKKIEVK IEDRCNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGNR
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-2695.24Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNRE
        MGRKKIEVK IEDRCNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGNRE
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNRE

XP_022155415.1 MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]5.7e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]5.7e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]5.7e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

TrEMBL top hitse value%identityAlignment
A0A1S3CCC5 MADS-box transcription factor 8-like1.5e-2593.44Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVKLIEDRCNRHVTFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSGN
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X12.8e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X32.8e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X22.8e-2778.31Show/hide
Query:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        +KRRV  +GIRVD G      +MGRKKIEVK IED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  EKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like3.8e-2493.44Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIE+K IED CNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG+
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog8.6e-1865.57Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q03489 Agamous-like MADS-box protein AGL9 homolog8.6e-1865.57Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q38836 Agamous-like MADS-box protein AGL118.6e-1868.85Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR KIE+K IE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + N
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q40168 Floral homeotic protein AGAMOUS8.6e-1867.74Show/hide
Query:  EMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        ++GR KIE+K IE+  NR VTFCKRR+GL+KKA ELSVLCD EV LVVF+NRGRLYE+ + +
Subjt:  EMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q9SAR1 MADS-box transcription factor 82.3e-1868.33Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein6.1e-1965.57Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT1G24260.2 K-box region and MADS-box transcription factor family protein6.1e-1965.57Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT1G24260.3 K-box region and MADS-box transcription factor family protein6.1e-1965.57Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT3G02310.1 K-box region and MADS-box transcription factor family protein6.1e-1969.49Show/hide
Query:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++E+K IE++ NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT4G09960.3 K-box region and MADS-box transcription factor family protein1.6e-1958.62Show/hide
Query:  ENKKEKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        E KKEK R   +G  +    T+ R  MGR KIE+K IE+  NR VTFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + N
Subjt:  ENKKEKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATAAAAAGGAGAAGCGAAGAGTGGGAGAAAGAGGAATTAGGGTTGACTGTGGAGATACACAAACAAGAGGAGAAATGGGACGGAAGAAGATCGAGGTGAAGCT
AATCGAAGATAGATGTAATCGCCATGTCACTTTCTGCAAGAGAAGATCTGGGTTAATCAAGAAAGCGCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTAGGTCTCGTCG
TCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGAGAACATCCCGGAAAATCGTGGGAACTTTGCTTTCCGACGGTTTTCTCGCGCTATGATTTATTT
TTCTTTCTCAATGTTTCTTTCTCAGCAGCATTTACGTGTCAACAAATATTTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAGAAAGAACGCGGCCCTCCGTTTTGTGATTCATTTGGATGGAAAATAAAAAGGAGAAGCGAAGAGTGGGAGAAAGAGGAATTAGGGTTGACTGTGGAGATACA
CAAACAAGAGGAGAAATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGATGTAATCGCCATGTCACTTTCTGCAAGAGAAGATCTGGGTTAATCAAGAAAGC
GCGAGAGCTCTCTGTTCTTTGCGACGTTGAGGTAGGTCTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGAGAACATCCCGGAAAATCGT
GGGAACTTTGCTTTCCGACGGTTTTCTCGCGCTATGATTTATTTTTCTTTCTCAATGTTTCTTTCTCAGCAGCATTTACGTGTCAACAAATATTTTAA
Protein sequenceShow/hide protein sequence
MENKKEKRRVGERGIRVDCGDTQTRGEMGRKKIEVKLIEDRCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNREHPGKSWELCFPTVFSRYDLF
FFLNVSFSAAFTCQQIF