; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC06G113270 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G113270
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr06:4381473..4383532
RNA-Seq ExpressionCcUC06G113270
SyntenyCcUC06G113270
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5153.06Show/hide
Query:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP-
        FEPLLDATSLL QIS +ADV+FT + L LI S H  P FVATLQ+S R        H++S  VSL+SFHDAMLD G FSS +IH+L+   ++ILR+E P 
Subjt:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP-

Query:  SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-----LKKKLKLNSK
        S  PPLH EL LSPP  AE+    Q++ GK+F V SK LR+IIKELP+F D+ +V V AT +R+KFSIASKEIT+TK   +C++V      + +L +  +
Subjt:  SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-----LKKKLKLNSK

Query:  SFS-ILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP
             L+FT+K+N++WF+KT N+  SV+SVP A+G  G Y++YFP
Subjt:  SFS-ILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]7.1e-6357.89Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        F+PLLDATS LAQIS +NAD+KFTP   ++I S H  P F+ATLQLS ++       + HS  VSL+SFHDA+LD G F+S TIHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM------VLKKKLKL
         S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+      V  +   +
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM------VLKKKLKL

Query:  NSKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP
               L+FT+K+N++WF+KTKNN +++M VP AYG  G Y+IYFP
Subjt:  NSKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP

XP_031743957.1 uncharacterized protein LOC116404737 [Cucumis sativus]3.1e-5855.06Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        FEPLLD+T  LA  S NNA VKFTP  L+LIVS    P F+ATLQLS R+       H HS  VSL+SFHDAMLD G+FS+ +IHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM-----VLKKKLKLN
         SQI PLH ELTLSPP   ++ IG+ +L+L K+FIV SK LRR+IKELPIFQ++S++CV  T S+IKFSIAS +I  ++ G HC++      ++ + ++N
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM-----VLKKKLKLN

Query:  -SKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP
               L+FT++++++WF+KTKNN ++VM VP A+G  G Y IYFP
Subjt:  -SKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]1.3e-5365.05Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        F+PLLDATS  AQIS ++ADVKFTP   + I+S H  P F+ATLQLS ++       H HS  VSL+SFHDA+LD G F+S TIHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM
         S+I PLHHEL LSPP   +N IG+ +LD GKYFIVKSK LRRIIKELPIFQ++S+VCV  T SR+KFSIASKEI L + GPHCK+
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]5.4e-7162.35Show/hide
Query:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQR------FHHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP-
        FEPLLDATS LAQISN ADVKFTP   YLI + +P P FVATLQLSQ+        H H+  V L+SFHDA+LD G F+S TIHLL+K N++ILRF+TP 
Subjt:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQR------FHHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP-

Query:  SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-------LKKKLKLN
        S+IPPLHHELT SPP LA+N IG QL+ GK+FIVKS+ LRRIIKELPIFQD+SVVCVG T S+IKFSIASKEI L     HC++V        + ++ L 
Subjt:  SQIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-------LKKKLKLN

Query:  SKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFPP
           F  L+FT+K+NK+WF+KTKNN +SVM+VP A+G +G Y+IYFPP
Subjt:  SKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFPP

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein1.3e-4164.52Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        F+PLLDATS  AQIS ++ADVKFTP   + I+S H  P F+ATLQLS ++       H HS  VSL+SFHDA+LD G F+S TIHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNS
         S+I PLHHEL LSPP   +N IG+ +LD GKYFIVKSK LRRIIKELPIFQ++S
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNS

A0A1S3C8J1 uncharacterized protein LOC1034980101.4e-4857.21Show/hide
Query:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETPS
        FEPL+DATSLLAQ++ +ADVKFTP  L +IVS    P FVATLQLS+R        H+ S  VSLQ FHDAMLD G FSS TIHLLD TN+++LRFETPS
Subjt:  FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETPS

Query:  -QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-------LKKKLKLN
          +PPLHHEL LSPP  AEN    Q++ G +F V S+ELRRIIKELP+F  ++ V V  T S++KFSI SKEI LTK G HCK+V        K ++ L 
Subjt:  -QIPPLHHELTLSPPHLAENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMV-------LKKKLKLN

Query:  SKSFSILDFTHKSNK
           F  L+FT+++NK
Subjt:  SKSFSILDFTHKSNK

A0A1S3CL88 uncharacterized protein LOC1035022503.4e-6357.89Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        F+PLLDATS LAQIS +NAD+KFTP   ++I S H  P F+ATLQLS ++       + HS  VSL+SFHDA+LD G F+S TIHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM------VLKKKLKL
         S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+      V  +   +
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM------VLKKKLKL

Query:  NSKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP
               L+FT+K+N++WF+KTKNN +++M VP AYG  G Y+IYFP
Subjt:  NSKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAAYGFVGPYLIYFP

A0A5D3BV00 Uncharacterized protein3.8e-4656.07Show/hide
Query:  FEPLLDATSLLAQISN-NADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        FEPLLD+TS LAQ SN NAD+KF P  L+LIV     P F ATLQLS R+       H HS  VSL+SFHDAMLD GDFSS +IHLLDKTN++ LRF+TP
Subjt:  FEPLLDATSLLAQISN-NADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYI-GRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGG------PH------CKMVL
         SQI P HHELTLSPP   +  I   +LDL K+ IVKSK LRR+IKELPIF ++S++CV  T S+IKFSIASK I L++         H       ++ +
Subjt:  -SQIPPLHHELTLSPPHLAENYI-GRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGG------PH------CKMVL

Query:  KKKLKLNSKSFSIL
         +KLK+NS S  +L
Subjt:  KKKLKLNSKSFSIL

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein5.2e-5163.44Show/hide
Query:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP
        F+PLLDATS LAQIS +NAD+KFTP   ++I S H  P F+ATLQLS ++       + HS  VSL+SFHDA+LD G F+S TIHLLDKTN++ILRF+TP
Subjt:  FEPLLDATSLLAQIS-NNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRF------HHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETP

Query:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM
         S+I PLHHELTLSPP   +N IG+ +LD  KYFIVKSK LRRIIK+LPIFQ++S++ V  T SR+KFSIASKEI LT+ G HCK+
Subjt:  -SQIPPLHHELTLSPPHLAENYIGR-QLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGAACCTCTTCTGGACGCAACCTCCTTACTAGCTCAAATTTCGAACAACGCCGACGTCAAATTCACGCCGTATTATCTCTACTTAATCGTATCGCAACACCCTTGCCC
TCTCTTCGTTGCAACACTTCAATTGTCCCAACGATTTCATCATCATCACTCTTTCATTGTTTCCCTTCAATCCTTCCATGATGCTATGTTGGATGCTGGAGATTTTTCTT
CACCGACAATCCATCTTTTGGACAAAACAAACGAATTGATCCTTAGATTTGAGACTCCAAGCCAAATCCCACCTTTGCATCATGAATTGACATTGTCACCTCCCCATTTA
GCTGAGAATTATATTGGCCGACAACTTGACTTAGGAAAATATTTCATAGTTAAATCTAAGGAATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATAATTCGGT
CGTTTGTGTTGGTGCAACCAAATCTCGAATCAAGTTCTCCATTGCATCTAAAGAGATTACTCTTACTAAAGGGGGTCCACACTGTAAAATGGTTTTGAAGAAGAAGTTGA
AACTCAATTCCAAATCATTCTCCATCCTCGATTTTACACATAAATCCAATAAGATATGGTTTTTTAAGACAAAGAATAATTGTCACAGTGTAATGAGTGTCCCTGCTGCT
TATGGATTTGTTGGTCCATATCTAATCTACTTTCCCCCGTTTAGTTCCAAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGAACCTCTTCTGGACGCAACCTCCTTACTAGCTCAAATTTCGAACAACGCCGACGTCAAATTCACGCCGTATTATCTCTACTTAATCGTATCGCAACACCCTTGCCC
TCTCTTCGTTGCAACACTTCAATTGTCCCAACGATTTCATCATCATCACTCTTTCATTGTTTCCCTTCAATCCTTCCATGATGCTATGTTGGATGCTGGAGATTTTTCTT
CACCGACAATCCATCTTTTGGACAAAACAAACGAATTGATCCTTAGATTTGAGACTCCAAGCCAAATCCCACCTTTGCATCATGAATTGACATTGTCACCTCCCCATTTA
GCTGAGAATTATATTGGCCGACAACTTGACTTAGGAAAATATTTCATAGTTAAATCTAAGGAATTAAGACGAATTATAAAAGAATTACCTATCTTCCAAGATAATTCGGT
CGTTTGTGTTGGTGCAACCAAATCTCGAATCAAGTTCTCCATTGCATCTAAAGAGATTACTCTTACTAAAGGGGGTCCACACTGTAAAATGGTTTTGAAGAAGAAGTTGA
AACTCAATTCCAAATCATTCTCCATCCTCGATTTTACACATAAATCCAATAAGATATGGTTTTTTAAGACAAAGAATAATTGTCACAGTGTAATGAGTGTCCCTGCTGCT
TATGGATTTGTTGGTCCATATCTAATCTACTTTCCCCCGTTTAGTTCCAAGGTTTGA
Protein sequenceShow/hide protein sequence
FEPLLDATSLLAQISNNADVKFTPYYLYLIVSQHPCPLFVATLQLSQRFHHHHSFIVSLQSFHDAMLDAGDFSSPTIHLLDKTNELILRFETPSQIPPLHHELTLSPPHL
AENYIGRQLDLGKYFIVKSKELRRIIKELPIFQDNSVVCVGATKSRIKFSIASKEITLTKGGPHCKMVLKKKLKLNSKSFSILDFTHKSNKIWFFKTKNNCHSVMSVPAA
YGFVGPYLIYFPPFSSKV