; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC06G113380 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G113380
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr06:4431813..4432142
RNA-Seq ExpressionCcUC06G113380
SyntenyCcUC06G113380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646596.1 hypothetical protein Csa_004903, partial [Cucumis sativus]2.3e-1644.95Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPSS
        I L F+  S
Subjt:  IHLIFEPSS

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]4.9e-2761.11Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAEY V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPS
        I L FEPS
Subjt:  IHLIFEPS

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]3.5e-3370.37Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MFSIK+D+LDPFLDAT+LF E +NDEICLK SPSTFS+I+RYQ P FFAM+ MP P F EYSVDRNH S+ISL  F NA+LEGQS+ SSMSIH+ E +N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPS
        I   FEPS
Subjt:  IHLIFEPS

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]5.3e-2963.3Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MFSIKIDD+DPFLDAT LFAE+ +DEICLK  PST SII RY+ P+FF  M +P P F EYSVDRNH S+ISL +F++A+LE Q+F ++++IH+ E +N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPSS
        I L FEPSS
Subjt:  IHLIFEPSS

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]1.8e-1646.36Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFE-PSS
        I L F+ PSS
Subjt:  IHLIFE-PSS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein8.5e-1746.36Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MF +K+ + DP LDAT+ FA+I  D+  +K +PS F IIS ++ P F A + + P +F  +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFE-PSS
        I L F+ PSS
Subjt:  IHLIFE-PSS

A0A0A0KB76 Uncharacterized protein2.4e-2761.11Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MFSIKID LDP LDA +LF +IVND+ICLK S STFSII+RYQHP FFAM+ +P P FAEY V R+H  ++SL + H A+  GQ++ SS+ IH+ E++N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPS
        I L FEPS
Subjt:  IHLIFEPS

A0A0A0LIE0 Uncharacterized protein1.7e-3370.37Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MFSIK+D+LDPFLDAT+LF E +NDEICLK SPSTFS+I+RYQ P FFAM+ MP P F EYSVDRNH S+ISL  F NA+LEGQS+ SSMSIH+ E +N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFEPS
        I   FEPS
Subjt:  IHLIFEPS

A0A1S3CL88 uncharacterized protein LOC1035022502.1e-1544.55Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MF +K+ + DP LDAT+  A+I  D   LK +PS F II+ ++ P F A + + P +F  +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFE-PSS
        + L F+ PSS
Subjt:  IHLIFE-PSS

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.1e-1544.55Show/hide
Query:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN
        MF +K+ + DP LDAT+  A+I  D   LK +PS F II+ ++ P F A + + P +F  +SVD +H+SK+SL +FH+A+L+G SF +SM+IH+ ++ N 
Subjt:  MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENN

Query:  IHLIFE-PSS
        + L F+ PSS
Subjt:  IHLIFE-PSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACG
TTCTCTATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAG
ATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGAGCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTT
GAGCCTTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTATCAAGATTGACGACCTTGATCCTTTCTTGGATGCAACCACTCTATTCGCCGAAATTGTGAACGACGAAATCTGCCTGAAAATCTCACCGTCGACG
TTCTCTATAATTTCTCGCTACCAGCACCCTCTTTTCTTTGCAATGATGATTATGCCGCCACCATTTTTCGCTGAGTATTCCGTTGATCGGAATCACAATTCAAAG
ATTTCCCTATCGGCCTTCCACAATGCTATGTTGGAAGGCCAAAGCTTTTGTTCTTCAATGAGCATCCATGTTCATGAACAAGAAAATAATATACACCTTATATTT
GAGCCTTCAAGTTAG
Protein sequenceShow/hide protein sequence
MFSIKIDDLDPFLDATTLFAEIVNDEICLKISPSTFSIISRYQHPLFFAMMIMPPPFFAEYSVDRNHNSKISLSAFHNAMLEGQSFCSSMSIHVHEQENNIHLIF
EPSS