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CcUC06G116100 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G116100
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr06:7586809..7587171
RNA-Seq ExpressionCcUC06G116100
SyntenyCcUC06G116100
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.1e-2750.45Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL
        MW+  N     VF+  FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL++++S+C  +W L GDFNV  W  ETT+ +P+ ++MRRFNS+I+N NL
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL

Query:  IEPIQINGTYT
        I+P   N  YT
Subjt:  IEPIQINGTYT

KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]4.3e-2449.5Show/hide
Query:  DVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTY
        DV +  FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NLI+P   N  +
Subjt:  DVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTY

Query:  T
        T
Subjt:  T

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.4e-2748.65Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL
        MW+  N     VF+ NFS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NL
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL

Query:  IEPIQINGTYT
        I+P   N  +T
Subjt:  IEPIQINGTYT

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.1e-2350.53Show/hide
Query:  FSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTYT
        FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NLI+P   N  +T
Subjt:  FSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTYT

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]1.2e-2342.61Show/hide
Query:  GILIMWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYIT
        GI+++WD L+  A +V   +FS+SV     +   WWL+G+Y P  ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I 
Subjt:  GILIMWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYIT

Query:  NVNLIEPIQINGTYT
           LI+P   NG YT
Subjt:  NVNLIEPIQINGTYT

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.4e-2750.45Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL
        MW+  N     VF+  FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL++++S+C  +W L GDFNV  W  ETT+ +P+ ++MRRFNS+I+N NL
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL

Query:  IEPIQINGTYT
        I+P   N  YT
Subjt:  IEPIQINGTYT

A0A5A7TTA1 DUF4283 domain-containing protein2.1e-2449.5Show/hide
Query:  DVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTY
        DV +  FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NLI+P   N  +
Subjt:  DVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTY

Query:  T
        T
Subjt:  T

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein2.6e-2748.65Show/hide
Query:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL
        MW+  N     VF+ NFS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NL
Subjt:  MWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNL

Query:  IEPIQINGTYT
        I+P   N  +T
Subjt:  IEPIQINGTYT

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein3.9e-2350.53Show/hide
Query:  FSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTYT
        FS+S+Q+   NG  WWLS IYGPA R+ R  FWEEL+N++S+C  +W L GDFNV  W  ET++ +P+ ++M+RFN++I+N NLI+P   N  +T
Subjt:  FSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLIEPIQINGTYT

A0A6J1CVN2 uncharacterized protein LOC1110146576.0e-2442.61Show/hide
Query:  GILIMWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYIT
        GI+++WD L+  A +V   +FS+SV     +   WWL+G+Y P  ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I 
Subjt:  GILIMWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYIT

Query:  NVNLIEPIQINGTYT
           LI+P   NG YT
Subjt:  NVNLIEPIQINGTYT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCACTCCAGGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACCGATGTATTCGAGGAGAATTTCTCCTTATCTGTACAAATTATTAGGACTAATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCCAGCCAGTAGAAGAAAGCGTATGGCTTTTTGGGAAGAGCTCGACAATGTGCGATCTCTATGTGGTGAGTCCTGGTTTT
TAGCTGGTGATTTCAACGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTAATCTTATT
GAGCCTATACAAATCAATGGAACCTACACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCACTCCAGGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACCGATGTATTCGAGGAGAATTTCTCCTTATCTGTACAAATTATTAGGACTAATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCCAGCCAGTAGAAGAAAGCGTATGGCTTTTTGGGAAGAGCTCGACAATGTGCGATCTCTATGTGGTGAGTCCTGGTTTT
TAGCTGGTGATTTCAACGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTAATCTTATT
GAGCCTATACAAATCAATGGAACCTACACATAG
Protein sequenceShow/hide protein sequence
MQITPGILIMWDSLNHKATDVFEENFSLSVQIIRTNGLIWWLSGIYGPASRRKRMAFWEELDNVRSLCGESWFLAGDFNVYCWTFETTSPHPSQINMRRFNSYITNVNLI
EPIQINGTYT