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CcUC06G117460 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G117460
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
Genome locationCicolChr06:10096317..10097176
RNA-Seq ExpressionCcUC06G117460
SyntenyCcUC06G117460
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR018523 - Isocitrate lyase/phosphorylmutase, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013429.1 hypothetical protein SDJN02_23595, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-2975Show/hide
Query:  RTWVALGDGGGAGEVTGAGSHSFALEEAVEGVGGVGLDGVGEETESVQQNRSTVGAGGAGVVKGGLEGFVGGVATGHAPVRAVNGGG--SDEEKEEKEGV
        RT V+LGDGGGAGEVTGA  HS ALEEAVE VGGVGLDGV EE ESV+Q RS VGAGGA VV+GGL+GFV G+A GHAPVRAV+GGG   +EE+EE+EGV
Subjt:  RTWVALGDGGGAGEVTGAGSHSFALEEAVEGVGGVGLDGVGEETESVQQNRSTVGAGGAGVVKGGLEGFVGGVATGHAPVRAVNGGG--SDEEKEEKEGV

Query:  GGKK
        G  K
Subjt:  GGKK
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGACGGACTTGGGTCGCTCTGGGCGATGGTGGCGGAGCCGGCGAAGTCACAGGAGCCGGGAGCCATAGCTTTGCGCTGGAAGAAGCTGTTGAAGGCGTA
GGAGGCGTGGGCCTGGATGGTGTTGGGGAGGAAACAGAGTCCGTTCAACAGAATCGGAGTACAGTCGGCGCCGGTGGCGCAGGCGTAGTCAAGGGCGGCTTGGAG
GGCTTCGTAGGTGGCGTCGCTACGGGCCACGCACCAGTACGCGCCGTCAACGGCGGAGGTTCCGACGAGGAAAAAGAAGAGAAGGAAGGAGTGGGAGGAAAGAAG
TGTGGCCATTTGGGAAAGTGTTTAATAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGACGGACTTGGGTCGCTCTGGGCGATGGTGGCGGAGCCGGCGAAGTCACAGGAGCCGGGAGCCATAGCTTTGCGCTGGAAGAAGCTGTTGAAGGCGTA
GGAGGCGTGGGCCTGGATGGTGTTGGGGAGGAAACAGAGTCCGTTCAACAGAATCGGAGTACAGTCGGCGCCGGTGGCGCAGGCGTAGTCAAGGGCGGCTTGGAG
GGCTTCGTAGGTGGCGTCGCTACGGGCCACGCACCAGTACGCGCCGTCAACGGCGGAGGTTCCGACGAGGAAAAAGAAGAGAAGGAAGGAGTGGGAGGAAAGAAG
TGTGGCCATTTGGGAAAGTGTTTAATAGTGTAA
Protein sequenceShow/hide protein sequence
MHGRTWVALGDGGGAGEVTGAGSHSFALEEAVEGVGGVGLDGVGEETESVQQNRSTVGAGGAGVVKGGLEGFVGGVATGHAPVRAVNGGGSDEEKEEKEGVGGKK
CGHLGKCLIV