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CcUC06G120160 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G120160
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCicolChr06:21372906..21374451
RNA-Seq ExpressionCcUC06G120160
SyntenyCcUC06G120160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG68750.1 hypothetical protein EZV62_003685 [Acer yangbiense]1.4e-1151.72Show/hide
Query:  LRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNL
        L+K  T  N  L + K +  KF AIG+PLSY  HLGY+LEGLG+EY  FV +I+N  D PSI DV  LL ++E RL K+TL ++ +L
Subjt:  LRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNL

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]8.5e-1451.11Show/hide
Query:  LLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSISQYS
        L K+K +  K  +IG+P+S   H+ YI+EGLG EY  FV +IQN +D  ++ DV  LL AY+ RLEKQ  V+QLN++QANVANL +++ S
Subjt:  LLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSISQYS

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.6e-1849.14Show/hide
Query:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV
        G     + LRK  +  +  L K+K +  KF A+G+PLSY  HL ++L+GLG+EY  FV +I N  D PS+ DV  LL AYEARL+KQ  V+QLN+ QAN+
Subjt:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV

Query:  ANLSISQYSCRPKWPP
         NLS+   S RP  PP
Subjt:  ANLSISQYSCRPKWPP

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]1.2e-2045.86Show/hide
Query:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV
        GF    ++++K     +  L ++K +   F AIG+PLSY  HL YILEGLG+EY PFV +I N T+ PSI DV  LL  Y++RLEKQT  + L LIQANV
Subjt:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV

Query:  ANLSISQYSCRPKWPPYDKSFTPITLPMLGFLP
        A+LSI+  +  P+W  +++S    + P +G  P
Subjt:  ANLSISQYSCRPKWPPYDKSFTPITLPMLGFLP

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]1.8e-1138.58Show/hide
Query:  KELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSIS
        +++RK     +  L ++K +  KF  +G+ +SY  HL +IL+GLG+EY  FV +IQN  D  S+ DV  LL +YEA+LEKQ  ++ LN+ QA ++ LS  
Subjt:  KELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSIS

Query:  QYSCRPKWPPYDKSFTPITLPMLGFLP
          S R    P+  + + + LP   F P
Subjt:  QYSCRPKWPPYDKSFTPITLPMLGFLP

TrEMBL top hitse value%identityAlignment
A0A438FTV3 Uncharacterized protein1.6e-1038.28Show/hide
Query:  RFLLQLASRGFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVN
        RF L L  RG     + L+K        + KLK +     AIG+P+S   HL Y+  GL  EY PFV +IQN +D P+I  +  LL +Y+ RLE+Q  V+
Subjt:  RFLLQLASRGFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVN

Query:  QLNLIQANVANLSISQYSCRPKWPPYDK
         LN  Q ++A+L+   Y   P+ PP+++
Subjt:  QLNLIQANVANLSISQYSCRPKWPPYDK

A0A5C7IHH0 Uncharacterized protein6.6e-1251.72Show/hide
Query:  LRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNL
        L+K  T  N  L + K +  KF AIG+PLSY  HLGY+LEGLG+EY  FV +I+N  D PSI DV  LL ++E RL K+TL ++ +L
Subjt:  LRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNL

A0A6J1D6N7 uncharacterized protein LOC1110174384.1e-1451.11Show/hide
Query:  LLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSISQYS
        L K+K +  K  +IG+P+S   H+ YI+EGLG EY  FV +IQN +D  ++ DV  LL AY+ RLEKQ  V+QLN++QANVANL +++ S
Subjt:  LLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLSISQYS

A0A6J1DQX7 uncharacterized protein LOC1110223151.2e-1849.14Show/hide
Query:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV
        G     + LRK  +  +  L K+K +  KF A+G+PLSY  HL ++L+GLG+EY  FV +I N  D PS+ DV  LL AYEARL+KQ  V+QLN+ QAN+
Subjt:  GFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANV

Query:  ANLSISQYSCRPKWPP
         NLS+   S RP  PP
Subjt:  ANLSISQYSCRPKWPP

A0A7J0E8R3 Uncharacterized protein2.3e-0945.78Show/hide
Query:  KLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLS
        K + L     +IG+P++Y  HL Y L GLG +Y PFV +IQ+    PSI +V  LL +Y+ARLE+Q+  + L+ +QAN+ANL+
Subjt:  KLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLNLIQANVANLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTTTTCTTCTACAACTTGCATCACGGGGCTTTGGTCTCAGCTACAAAGAGTTAAGAAAGATGGTCACTCTATCTAACAATACGTTGCTCAAATTAAAG
ATGTTGCGGATAAAGTTCTGTGCTATTGGCAAGCCTTTATCTTATTTTTATCATCTGGGTTATATCCTTGAAGGCCTGGGTAATGAGTATTATCCATTTGTCATT
ACTATTCAGAATTGCACTGATGGACCCTCTATTACAGATGTTCCCATCCTTCTTTGGGCGTATGAGGCTCGCTTGGAGAAACAAACTTTGGTTAATCAACTCAAT
CTTATTCAGGCTAATGTTGCCAATTTGTCCATATCACAATACTCTTGCCGACCAAAATGGCCTCCATACGATAAGTCTTTTACTCCTATCACTCTGCCAATGCTT
GGGTTTCTGCCATTTTCTATTGTTGTTCTTTCTGGTCCTGATATTCTTGATAATGCTCGCCCTCTTATCCCTGTGTCCAACTTCCAAACAATCGTCCTCAATAAC
CTTATAAACCTCCAAACAGTTGTCCTCAATGTTAGATTTGTAGTAAGCTTGGGCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTTTTCTTCTACAACTTGCATCACGGGGCTTTGGTCTCAGCTACAAAGAGTTAAGAAAGATGGTCACTCTATCTAACAATACGTTGCTCAAATTAAAG
ATGTTGCGGATAAAGTTCTGTGCTATTGGCAAGCCTTTATCTTATTTTTATCATCTGGGTTATATCCTTGAAGGCCTGGGTAATGAGTATTATCCATTTGTCATT
ACTATTCAGAATTGCACTGATGGACCCTCTATTACAGATGTTCCCATCCTTCTTTGGGCGTATGAGGCTCGCTTGGAGAAACAAACTTTGGTTAATCAACTCAAT
CTTATTCAGGCTAATGTTGCCAATTTGTCCATATCACAATACTCTTGCCGACCAAAATGGCCTCCATACGATAAGTCTTTTACTCCTATCACTCTGCCAATGCTT
GGGTTTCTGCCATTTTCTATTGTTGTTCTTTCTGGTCCTGATATTCTTGATAATGCTCGCCCTCTTATCCCTGTGTCCAACTTCCAAACAATCGTCCTCAATAAC
CTTATAAACCTCCAAACAGTTGTCCTCAATGTTAGATTTGTAGTAAGCTTGGGCACATAG
Protein sequenceShow/hide protein sequence
MDRFLLQLASRGFGLSYKELRKMVTLSNNTLLKLKMLRIKFCAIGKPLSYFYHLGYILEGLGNEYYPFVITIQNCTDGPSITDVPILLWAYEARLEKQTLVNQLN
LIQANVANLSISQYSCRPKWPPYDKSFTPITLPMLGFLPFSIVVLSGPDILDNARPLIPVSNFQTIVLNNLINLQTVVLNVRFVVSLGT