CuGenDBv2

Gene ID	CcUC06G120460
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome location	CicolChr06:22138835..22149307
RNA-Seq Expression	CcUC06G120460
Synteny	CcUC06G120460
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit

Homology

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GenBank top hits

e value

%identity

Alignment

ABV65193.1 NADH-plastoquinone oxidoreductase subunit 5, partial [Elaeagnus sp. Nickrent 2898]

2.3e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

AEI27463.1 NADH dehydrogenase subunit F, partial [Elaeagnus bockii]

2.3e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

QWT89112.1 NADH dehydrogenase subunit 5 [Elaeagnus umbellata]

2.3e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

YP_009171647.1 NADH-plastoquinone oxidoreductase subunit 5 [Elaeagnus macrophylla]

2.3e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

YP_009529743.1 NADH-plastoquinone oxidoreductase subunit 5 [Gironniera subaequalis]

2.3e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GA+AKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF+VIPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

TrEMBL top hits

e value

%identity

Alignment

A0A0N7BRY2 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

1.1e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

A0A3P8MUY6 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

1.1e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GA+AKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF+VIPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

A0A6F8UL98 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

1.1e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

A9XUN3 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)

1.1e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

F8TRC7 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)

1.1e-21

87.14

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +CS+LL  GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF++IPYIMNLIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

SwissProt top hits

e value

%identity

Alignment

A4GYW4 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

2.5e-23

85.71

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +C++LL  GA+AKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LFVVIPYIM LIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

A8SEF0 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

6.6e-24

85.71

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Query:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +C++LL +GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF+VIPYIMNLI+LI
Subjt:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

Q14FB0 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

2.5e-23

85.71

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Query:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +C++LL  GA+AKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LFVVIPYIM LIALI
Subjt:  MCSYLLI-GAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

Q6EW03 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

3.3e-23

82.86

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Query:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +C++LL +GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF+ IPYIMN+I+LI
Subjt:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

Q7YJT6 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

1.1e-23

85.71

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Query:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI
        +C++LL +GAVAKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF VIPYIMNLI+LI
Subjt:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALI

Arabidopsis top hits

e value

%identity

Alignment

ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein

6.3e-22

68.67

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Query:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAV
        +C++LL +G +AKSAQFPLHVWLPDAMEGPTPISA IHAATMVAAGIFLVAR+L LF+VIP IM +I+LI +     G   A+
Subjt:  MCSYLL-IGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAV

ATMG00060.1 NADH dehydrogenase subunit 5C

7.0e-13

52.27

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Query:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL
        +C  LLIGAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR   LF   P      ALI +  AG        T  +L
Subjt:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL

ATMG00513.1 NADH dehydrogenase 5A

7.0e-13

52.27

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Query:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL
        +C  LLIGAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR   LF   P      ALI +  AG        T  +L
Subjt:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL

ATMG00665.1 NADH dehydrogenase 5B

7.0e-13

52.27

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Query:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL
        +C  LLIGAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR   LF   P      ALI +  AG        T  +L
Subjt:  MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVL

Sequences

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CDS sequence

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ATGTGTTCTTATCTATTAATAGGTGCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTTTT
ATACATGCTGCTACGATGGTAGCAGCGGGAATTTTTCTTGTCGCTCGGGTTCTTCTGCTTTTTGTAGTAATACCTTATATCATGAATCTAATAGCTTTGATAGAA
CTTGCAGTTGCAGGATGTGGAATATTTGCAGCCGTGCTCACATGCGCGGTATTGAGTAAGAAGCACTTATCTATTAAAGACTATGTGTTGACTGTATTGCCTTAA

mRNA sequence

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Protein sequence

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MCSYLLIGAVAKSAQFPLHVWLPDAMEGPTPISAFIHAATMVAAGIFLVARVLLLFVVIPYIMNLIALIELAVAGCGIFAAVLTCAVLSKKHLSIKDYVLTVLP

CcUC06G120460 (gene) of Watermelon (PI 537277) v1 genome