CuGenDBv2

Gene ID	CcUC06G123530
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	CicolChr06:25995505..25998378
RNA-Seq Expression	CcUC06G123530
Synteny	CcUC06G123530
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR008991 - Translation protein SH3-like domain superfamily IPR014722 - Ribosomal protein L2, domain 2 IPR022669 - Ribosomal protein L2, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABK96157.1 unknown [Populus trichocarpa]

1.0e-11

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

KAG4934626.1 hypothetical protein JHK85_049545 [Glycine max]

4.7e-12

77.59

Show/hide

Query:  MGHGSHFTTRGQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        MG+    +  GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGN G
Subjt:  MGHGSHFTTRGQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

QGU84369.1 ribosomal protein L2 [Casearia velutina]

1.0e-11

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

QHO57683.1 50S ribosomal protein [Arachis hypogaea]

4.7e-12

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEVCLISKNCSAT  QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

TXG73369.1 hypothetical protein EZV62_001948 [Acer yangbiense]

4.7e-12

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSA LKLPSGEVCLISKNCSATV QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

TrEMBL top hits

e value

%identity

Alignment

A0A023T0V5 50S ribosomal protein L2, chloroplastic

5.1e-12

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

A0A075EBV3 50S ribosomal protein L2, chloroplastic

5.1e-12

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

A0A445DVM4 Ribosomal_L2_C domain-containing protein

2.3e-12

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEVCLISKNCSAT  QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

A0A5C7IWB2 50S ribosomal protein L2, chloroplastic

2.3e-12

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSA LKLPSGEVCLISKNCSATV QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

A0A5Q0S0B6 50S ribosomal protein L2, chloroplastic

5.1e-12

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

SwissProt top hits

e value

%identity

Alignment

A4GYV2 50S ribosomal protein L2, chloroplastic

1.4e-14

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Q14F95 50S ribosomal protein L2-A, chloroplastic

1.4e-14

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Q14FB6 50S ribosomal protein L2-B, chloroplastic

1.4e-14

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Q4VZK5 50S ribosomal protein L2, chloroplastic

1.4e-14

91.67

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGNAG
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Q8S8V3 50S ribosomal protein L2-A, chloroplastic

4.0e-14

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

2.8e-15

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

ATCG01310.1 ribosomal protein L2

2.8e-15

89.58

Show/hide

Query:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG
        GQLARAAGAVAKLIAK+ KSATLKLPSGEV LISKNCSATV QVGN G
Subjt:  GQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTGATGTGGATCGAACATTGGGAAAGCATGGGCCATGGGAGTCACTTTACTACAAGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAAAGGA
GAAATCGGCCACATTAAAATTACCTTCTGGGGAAGTCTGTTTGATATCCAAAAATTGCTCAGCAACAGTCAGACAAGTGGGGAATGCTGGG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

LMWIEHWESMGHGSHFTTRGQLARAAGAVAKLIAKKEKSATLKLPSGEVCLISKNCSATVRQVGNAG

CcUC06G123530 (gene) of Watermelon (PI 537277) v1 genome