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CcUC06G126480 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC06G126480
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCicolChr06:28762763..28766031
RNA-Seq ExpressionCcUC06G126480
SyntenyCcUC06G126480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5476902.1 hypothetical protein F2P56_003592 [Juglans regia]4.2e-0576.19Show/hide
Query:  LSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS
        L  LPSL+NPSKKKSS VTSEAGLQGKPL +  AFK A QKS
Subjt:  LSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS
TrEMBL top hitse value%identityAlignment
A0A2N9FTS7 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-0760.32Show/hide
Query:  PSVLSPGNAKTSPGVRPKPKGLSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS
        P VLS GN +T   V  +PK    LPSL++PSKK+S A T EAGLQGKP  + VAFKSA QKS
Subjt:  PSVLSPGNAKTSPGVRPKPKGLSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGCCAAGTGTATTGAGTCCTGGCAATGCAAAAACATCTCCTGGTGTGAGGCCAAAACCAAAAGGATTATCTGGGTTGCCTTCTTTACTCAATCCATCA
AAGAAGAAATCATCTGCAGTAACTTCTGAAGCTGGCTTGCAAGGAAAACCACTAAGGGAAACAGTTGCATTTAAATCAGCAACACAGAAGTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGCCAAGTGTATTGAGTCCTGGCAATGCAAAAACATCTCCTGGTGTGAGGCCAAAACCAAAAGGATTATCTGGGTTGCCTTCTTTACTCAATCCATCA
AAGAAGAAATCATCTGCAGTAACTTCTGAAGCTGGCTTGCAAGGAAAACCACTAAGGGAAACAGTTGCATTTAAATCAGCAACACAGAAGTCCTAAACTGAAGCT
ACTTCCAATTTGTACTTCAGTTGTACTGGAGAAAACATAACTAATCTTCCCTTACAGCTCTTAATTTTATTTGCTGTCATGAAAAGTGAATCCTAG
Protein sequenceShow/hide protein sequence
MDRPSVLSPGNAKTSPGVRPKPKGLSGLPSLLNPSKKKSSAVTSEAGLQGKPLRETVAFKSATQKS