CuGenDBv2

Gene ID	CcUC06G127410
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cytochrome b6-f complex subunit 4
Genome location	CicolChr06:29623897..29627137
RNA-Seq Expression	CcUC06G127410
Synteny	CcUC06G127410
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function)
InterPro domains	IPR036150 - Cytochrome b/b6, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QWQ51329.1 cytochrome b6-f complex subunit IV [Dickinsia hydrocotyloides]

1.9e-26

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

QYC93908.1 cytochrome b6/f complex subunit 4 [Sonchus grandifolius]

1.1e-26

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT++  LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

YP_009461758.1 cytochrome b/f [Chionanthus parkinsonii]

1.9e-26

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

YP_009627422.1 cytochrome b6/f complex subunit IV [Tinospora cordifolia]

1.9e-26

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

YP_009652049.1 PetD [Cornus officinalis]

1.9e-26

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

TrEMBL top hits

e value

%identity

Alignment

A0A1U8LXQ6 Cytochrome b

9.3e-27

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

A0A1U9YE37 Cytochrome b6-f complex subunit 4

9.3e-27

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

A0A292G397 Cytochrome b6-f complex subunit 4

9.3e-27

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

A0A6B9TT79 Cytochrome b6-f complex subunit 4

9.3e-27

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

A0A7H1KFU8 Cytochrome b6-f complex subunit 4

9.3e-27

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

SwissProt top hits

e value

%identity

Alignment

A0A366 Cytochrome b6-f complex subunit 4

2.5e-29

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Q1KXS8 Cytochrome b6-f complex subunit 4

2.5e-29

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Q2L939 Cytochrome b6-f complex subunit 4

2.5e-29

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Q4VZK4 Cytochrome b6-f complex subunit 4

2.5e-29

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Q7FNS2 Cytochrome b6-f complex subunit 4

2.5e-29

91.67

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00730.1 photosynthetic electron transfer D

5.2e-30

90.28

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Query:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF
        RT+   LLGVLLMVS+PAGLLTVPFLENVNKFQNPFRRPV TTVFLIGTA ALWLGIGATLPIDKSLTLGLF
Subjt:  RTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPFRRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Sequences

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CDS sequence

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ATGGAAACGGAAGGATTGAACTCTTTTGCTGCTCAAGAGATGAAGAACGCAAACGCTTTTCATCTGCCGCCAGTACTCGCCGTAGGGAGAAGCGGCTATGTCTCTGGAGC
TGTAAAGAAGCTTGTGGCCAATGACGAGATCGTGGGTTTTCATGATATCACGAGCGAGATCGGAGGAAGAAACAACGATGGTGGGAACAGAGCCGAGGCGGAGGAGAAAC
AGAGGACCATGGCGGCGGGCTTATTGGGTGTTCTTTTAATGGTTTCTATACCGGCGGGATTATTAACTGTACCGTTTTTGGAGAATGTCAATAAATTCCAAAATCCATTT
CGTCGTCCAGTAGTGACAACCGTCTTTTTGATTGGTACCGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCTTTTTTA
A

mRNA sequence

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Protein sequence

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METEGLNSFAAQEMKNANAFHLPPVLAVGRSGYVSGAVKKLVANDEIVGFHDITSEIGGRNNDGGNRAEAEEKQRTMAAGLLGVLLMVSIPAGLLTVPFLENVNKFQNPF
RRPVVTTVFLIGTAVALWLGIGATLPIDKSLTLGLF

CcUC06G127410 (gene) of Watermelon (PI 537277) v1 genome