; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC08G146830 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC08G146830
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNA-binding protein 24 isoform X1
Genome locationCicolChr08:4228808..4233777
RNA-Seq ExpressionCcUC08G146830
SyntenyCcUC08G146830
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656046.1 RNA-binding protein 24 isoform X1 [Cucumis sativus]4.8e-15497.19Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS
        STPKHEKKKWELTGGGGG  NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGILS
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS

Query:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

XP_016902398.1 PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo]1.3e-14694.39Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS
        STPKH        GGGGG  NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGILS
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS

Query:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

XP_022157230.1 RNA-binding protein 24 isoform X1 [Momordica charantia]4.4e-14792.1Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTP+NLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA
        STPKHEKKKWELT GGGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYA+QQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGI++GA
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        AAAAAAFYPYFQFGEGSGGG       GSGQQ GYGVQYPHHLFQYSAAINS +AT+FPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  AAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

XP_022930178.1 RNA-binding protein 38 isoform X1 [Cucurbita moschata]7.5e-14792.73Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA
        STPKHEKKKWELT GGGGGRNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPT+YYNVYGGATAQYPMYGTGPGGILSGA
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        AAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPHHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Subjt:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

XP_038890037.1 RNA-binding protein 24 isoform X1 [Benincasa hispida]7.0e-15395.5Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGG-----GGRNFRVLSS-FQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPG
        STPKHEKKKWELTGGGG     GGRNFRVLSS FQTGFGGNVGSAFHSPTTFPHYAI QGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPG
Subjt:  STPKHEKKKWELTGGGG-----GGRNFRVLSS-FQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPG

Query:  GILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        GILSGAAAAAAAFYPYFQFGEGSGGGGSGQ GYGVQYPHHLFQYS AINS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  GILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

TrEMBL top hitse value%identityAlignment
A0A1S4E2E1 RNA-binding protein 24 isoform X12.3e-15497.19Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS
        STPKHEKKKWELTGGGGG  NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGILS
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS

Query:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

A0A1S4E2E8 RNA-binding protein 24 isoform X36.2e-14794.39Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS
        STPKH        GGGGG  NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGILS
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILS

Query:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  GAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

A0A6J1DSJ0 RNA-binding protein 24 isoform X12.1e-14792.1Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTP+NLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA
        STPKHEKKKWELT GGGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYA+QQGIPYN+YGYSSYSPDYTYPT+YYNVYGGATAQYPMYGTGPGGI++GA
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        AAAAAAFYPYFQFGEGSGGG       GSGQQ GYGVQYPHHLFQYSAAINS +AT+FPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Subjt:  AAAAAAFYPYFQFGEGSGGG-------GSGQQ-GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

A0A6J1EUB1 RNA-binding protein 38 isoform X13.6e-14792.73Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA
        STPKHEKKKWELT GGGGGRNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPT+YYNVYGGATAQYPMYGTGPGGILSGA
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        AAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPHHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Subjt:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

A0A6J1IGG9 RNA-binding protein 38 isoform X13.6e-14792.73Show/hide
Query:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
        MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP
Subjt:  MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKP

Query:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA
        STPKHEKKKWELT GGGGGRNFRVLSSFQTGFGGNVGSAFHS  TFPHYAI QGIPYN+YGYSSYSPDY YPT+YYNVYGGATAQYPMYGTGPGGILSGA
Subjt:  STPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGA

Query:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
        AAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYPHHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Subjt:  AAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

SwissProt top hitse value%identityAlignment
D3Z4I3 RNA-binding protein 244.1e-2339.08Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG   +KP           
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF--YP
        +  G   G      +  Q  FG        +   +P   +Q G+   V  +   +      T Y +  G A AQY           + AAAAAAA+  YP
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF--YP

Query:  YFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA
        Y      +G   +G   Y VQ P      +AA   TAA
Subjt:  YFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA

Q6P8A7 RNA-binding protein 241.1e-2337.8Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG   +KP           
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQ---GIP-YNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF
                   R++   Q GF   V           H A+ Q   GIP + VY ++   P    P +       +T+ Y  Y +      S AAAAAAA+
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQ---GIP-YNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF

Query:  YPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQH
          Y      +  G     GYG   P  L   +    + AA  F Q+
Subjt:  YPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQH

Q76LC6 RNA-binding protein 244.1e-2337.74Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG   +KP           
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQ--GIP-YNVYGYSSYSPDYTYP------------TNYYNVYGGATAQYPMYGTGPGGI
                   RV+   Q GF       F  P   P + IQ+  GIP + VY  +   P    P            + Y +  G A AQY    T     
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQ--GIP-YNVYGYSSYSPDYTYP------------TNYYNVYGGATAQYPMYGTGPGGI

Query:  LSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQH
           AAAAA   YPY      +G   +   GY +Q P  L   +    + AA  F Q+
Subjt:  LSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQH

Q9BX46 RNA-binding protein 242.4e-2339.08Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA RAC D  P+IDGR+AN NLA LG   +KP           
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF--YP
        +  G   G      +  Q  FG        +   +P   +Q G+   V  +   +      T Y +  G A AQY           + AAAAAAA+  YP
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAF--YP

Query:  YFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA
        Y      +G   +G  GY VQ P      +AA   TAA
Subjt:  YFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA

Q9M1S3 Probable RNA-binding protein ARP12.8e-2737.64Show/hide
Query:  TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPS
        T +N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGFVTF++  AA RAC D+ P+I+GRRANCNLASLG +  K  
Subjt:  TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPS

Query:  TPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQ----QGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGIL
        T         +T    G +N    +    G      S ++ P+ F +   Q    Q +P+  YGY S    Y  P   +N   G      M G       
Subjt:  TPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQ----QGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGIL

Query:  SGAAAAAAAFYPYFQFGEG--SGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPP
           +     +Y +  +G G    G  S    +   YP+H  Q         A  FPQ   + P+S   TPP
Subjt:  SGAAAAAAAFYPYFQFGEG--SGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPP

Arabidopsis top hitse value%identityAlignment
AT1G22910.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.9e-6254.98Show/hide
Query:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA
           GGGG   N RV +S+ QTGFG         P TF HY     +P N++GYS YSPDY ++PTN Y +YG  +  QY +YG     GG L+ AAA+A 
Subjt:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA

Query:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSL-------PPTPPTLP
         FYP        GG G  Q      + HHL  Y+           P HY+ P  S+       P  PP +P
Subjt:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSL-------PPTPPTLP

AT1G22910.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-6256.64Show/hide
Query:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA
           GGGG   N RV +S+ QTGFG         P TF HY     +P N++GYS YSPDY ++PTN Y +YG  +  QY +YG     GG L+ AAA+A 
Subjt:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA

Query:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSL
         FYP        GG G  Q      + HHL  Y+           P HY+ P  S+
Subjt:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSL

AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-6053.82Show/hide
Query:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW
        GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA  ACVDA PVIDGRRANCNLASLG+QRSKPSTP H     
Subjt:  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKW

Query:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA
           GGGG   N RV +S+ QTGFG         P TF HY     +P N++GYS YSPDY ++PTN Y +YG  +  QY +YG     GG L+ AAA+A 
Subjt:  ELTGGGGGGRNFRV-LSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDY-TYPTNYYNVYGGAT-AQYPMYG--TGPGGILSGAAAAAA

Query:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPI
         FYP        GG G  Q      + HHL  Y+           P HY+ P  S+        S  T +   P+
Subjt:  AFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPI

AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.0e-6957.99Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H      
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPT-NYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYP
           G  GGR  +V S F+T F G   +A  SP  F HY     +PY N +G+SSYS DY YPT +YYNVYGGATAQ+PMYG+GP  +   AAA AA FYP
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPT-NYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYP

Query:  YFQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP
        Y QF EG+G       GY  + YP+H+F YSA         +P H+   P+SL P+ P +PS V  A+P
Subjt:  YFQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP

AT1G33470.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-7058.21Show/hide
Query:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE
        DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H      
Subjt:  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWE

Query:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPY
           G  GGR  +V S F+T F G   +A  SP  F HY     +PY N +G+SSYS DY YPT+YYNVYGGATAQ+PMYG+GP  +   AAA AA FYPY
Subjt:  LTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPY-NVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPY

Query:  FQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP
         QF EG+G       GY  + YP+H+F YSA         +P H+   P+SL P+ P +PS V  A+P
Subjt:  FQFGEGSGGGGSGQQGYG-VQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTTTTTTGTTTTTTTGTGGAAGATCATGACTCCATCTAACTTGGCAAGTCAGTTTGGCGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCA
CAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCC
GAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCC
ACGCCTAAGCATGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATC
AGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAACT
ATTACAATGTTTACGGCGGGGCAACTGCACAATACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTC
CAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAAC
GACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTTGTTTTTTTGTGGAAGATCATGACTCCATCTAACTTGGCAAGTCAGTTTGGCGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCA
CAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCC
GAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCC
ACGCCTAAGCATGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATC
AGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAACT
ATTACAATGTTTACGGCGGGGCAACTGCACAATACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTC
CAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAAC
GACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAGA
GACAACAGTTCTCATCGTCCTCAAGTCCCTTCAATTTGCTTTTTCGAAGTATCACTTTAAGTCAAAAAAACCAACAACTCAACCTTCGCCCTAACCATGGTTCAATCTCT
TTCTCTCTTCACTCTAACTCAACTCATGCCTTTATAAGCATTGTATATGCTTTTGGCCATTCCCAGCCCCCCATAGGGGCTACCTCAAAACCAACCATACCAAATCTCAC
CTCCTAAATTGGAGCAAAATCATGCATTTCTATTTTTTTTTTTATTATTATTCATATTAATTAGGTTTTAGTGAAACCAAGAAATTAAAAGGTGAAAGTGGTTCCTTTTA
TCAAGTGAACCAATACCCACTTCGTGAAAAAAAATCCAAACTTAGGCCATCAAGGGAATCGGCATTAAGTTGGTAAAACTCTTCACATAGCTTTGTTTTTTAATCTTCAA
AGCCTAGGAAAGGCTGATCTTAAGGATATAACAATAAAACATTTTTCCCCCAAAAAAAAAAAAATTGTTGTATATTTTATTCTAAACACCACACCCTCCTTTTCTCTTCC
ATCACTTTGAAAAAATTGGACTGAAAAAAGGCTAATATTTTTCTCATCATCCTTGTAATTAAATTTCAATTAGGGAGTAATTAGGAGAATTTCAAGAATTGGTGGGGCAA
GGCAAGGGCTACCCCCACCTCTTTCTTAAAATATCTAGCATTTTTTTTTTTCAAGATTAGGACCAATCACTAATCTTTAAAATTTTTCCTCCCTAGGCTAGTGGATATTT
TTTGTTTTTTTTTTTTTTTTTACAAATTAATTTAGTAATAGTTTGGTTTGACATATTATTCCCCTTGGGGTAGGGGAATAATACTAAATCTCTTTGATTAATTAACCCTT
AAGCACATTAGTTATTTCTTGTAATTAAAATTTTCACCAACAAATCGTGGTTGAACTTATGGGAGTTTACAACCTCGTTTATTTTTGGTAAATCAAAGCACAAATATTGC
TTTTGGTTTAACTGTTTTTTTTTTTTTTTTTTGGTGCATTTAGGTTCATAATTAGAAATTAATTAGGATTAGGTTCATGTCATCATTTTGAGATTCCATTAATGGATATT
GGAAGTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTTCACTAACCCTACCAACCATGGTTAGGACTTAGGTCAACT
TCATTTCTCTCTCTCTTTCTTCACCATGACGTTGCCTTTCATAATTTCTTCACTATTCCCATTTTACCCTCTTCATGTCATCCTCAATCATCTTCCTTTTGTTACTTTCA
CTCATTCACTCTCTCTCTCTGTGTCTTTCTTCTTTTCTCCATGTGTCTGTGTGTTCAAGCACTTTCTCTTCAGTGAGTCCTTGGAAACACTGTTTTTAATTAATTATGTC
TGTAAAAGAAGAGCCTTTTTCTTTCCTTCTTTCTTTCTTTCTTAATGTCTTTTTATGGTTGTAATGTAATTAGATACTTTAATTACTACCCTTTCTTTTATGTCAGGACT
TCTACTAAGATTTGATTCTTCCTGAGCTGCTCCTTTGCAGCTGCATGAAGAATAACCTGTGTACCTCAATATTAATTGCTTCTTTCTTTCTCCTCTATTCTCTAC
Protein sequenceShow/hide protein sequence
FFFVFLWKIMTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPS
TPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYF
QFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR