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CcUC08G150690 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC08G150690
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationCicolChr08:18905611..18907599
RNA-Seq ExpressionCcUC08G150690
SyntenyCcUC08G150690
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030096 - plasma membrane-derived thylakoid photosystem II (cellular component)
GO:0031676 - plasma membrane-derived thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
6WJ6_C Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803 [Synechocystis sp. PCC 6803 substr. Kazusa]8.3e-1580.36Show/hide
Query:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

CAA30071.1 unnamed protein product, partial [Synechocystis sp. PCC 6803]6.4e-1580.36Show/hide
Query:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSMVG R +     +WW+GNARLINLSGKLLGAHV HAGLIVFWAGAMNLFEVAHF
Subjt:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

KOR37856.1 Photosystem II reaction center protein [Planktothricoides sp. SR001]8.3e-1580.36Show/hide
Query:  TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSM+G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

WP_010872428.1 MULTISPECIES: photosystem II reaction center protein CP43 [unclassified Synechocystis]8.3e-1580.36Show/hide
Query:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

WP_194013892.1 MULTISPECIES: photosystem II reaction center protein CP43 [Synechocystis]8.3e-1580.36Show/hide
Query:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

TrEMBL top hitse value%identityAlignment
A0A0M1JX63 Photosystem II CP43 reaction center protein4.0e-1580.36Show/hide
Query:  TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSM+G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

A0A291R6S1 Photosystem II CP43 reaction center protein5.3e-1568.57Show/hide
Query:  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        F RRS   +  +  T  +G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

A0A291R7A1 Photosystem II CP43 reaction center protein5.3e-1589.36Show/hide
Query:  GSRVVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        G+   +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  GSRVVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

A0A291R7T1 Photosystem II CP43 reaction center protein5.3e-1568.57Show/hide
Query:  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        F RRS   +  +  T  +G R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  FCRRSSTQKAWWGWTSMVGSR-----VVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

A0A4D6C2G0 Photosystem II CP43 reaction center protein5.3e-1580.36Show/hide
Query:  TSMVGSRV-----VSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        T +VG R       +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  TSMVGSRV-----VSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

SwissProt top hitse value%identityAlignment
A9LYI1 Photosystem II CP43 reaction center protein3.2e-1797.62Show/hide
Query:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

P09193 Photosystem II CP43 reaction center protein1.1e-1780.36Show/hide
Query:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        TSMVG R +     +WW+GNARLINLSGKLLGAHVAHAGLIVFWAGAM LFEVAHF
Subjt:  TSMVGSRVV-----SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

Q3V538 Photosystem II CP43 reaction center protein3.2e-1797.62Show/hide
Query:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

Q85FM3 Photosystem II CP43 reaction center protein3.2e-1797.62Show/hide
Query:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

Q8HB52 Photosystem II CP43 reaction center protein3.2e-1797.62Show/hide
Query:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF

Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C2.3e-1897.62Show/hide
Query:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
        +WWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF
Subjt:  SWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGAAACTACACTGCTTTTTGTCGTCGGAGTTCGACGCAGAAGGCATGGTGGGGTTGGACGTCGATGGTGGGTAGCAGGGTGGTTTCTTGGTGGGCCGGGAATGC
CCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTC
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGAAACTACACTGCTTTTTGTCGTCGGAGTTCGACGCAGAAGGCATGGTGGGGTTGGACGTCGATGGTGGGTAGCAGGGTGGTTTCTTGGTGGGCCGGGAATGC
CCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTC
Protein sequenceShow/hide protein sequence
MGRNYTAFCRRSSTQKAWWGWTSMVGSRVVSWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHF