; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC08G150730 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC08G150730
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr08:18945806..18949695
RNA-Seq ExpressionCcUC08G150730
SyntenyCcUC08G150730
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040038.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-2338.57Show/hide
Query:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV
        +W+ L     + +EGTF++ +N    DG +   WWLS +YGP+  RNRK FW EL+ +K  C   W+L GDFNV R++ +T+++NPSK+ MR FN F+  
Subjt:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV

Query:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF
        + LI+P  S+  FT    ++      ID  L   ++ ++F
Subjt:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-2237.86Show/hide
Query:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV
        +W+ L     + +EGTF++ +N    DG +   WWLS +YGP+  RNRK FW EL+ +K  C   W+L GDFN  R++ +T+++NPSK+ MR FN F+  
Subjt:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV

Query:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF
        + LI+P  S+  FT    ++      ID  L   ++ ++F
Subjt:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]1.8e-3145.14Show/hide
Query:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG
        VN +++KSIWSSISI + F  +  +G +GGI+++W+ L H+ I  V G FTI  NF   DG+NWW++ VY   +R  RK FW+EL+ +   CG +W+L G
Subjt:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG

Query:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT
        DFN  RW  +T+S NP KY M KFN  +    L++P  ++G +T
Subjt:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]6.1e-3548.61Show/hide
Query:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG
        +N + IKS+WSSISIAW       +G +GGII+LW+ L+  A+E + G F+I V+FK  D F WWL+ VY P  ++ RK FW+EL  +   CG  W+LG 
Subjt:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG

Query:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT
        DFN+YRW+H+T+S NP +  M KFN F+D A LI+P  ++G +T
Subjt:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]4.1e-2338.57Show/hide
Query:  VIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNV
        ++KS+WS+  I W+      +G+A GI+ILWN    +A E +EG F++ +NF   DGF +W+S +YGP++      FW+EL+ +   C  HW+L GDFNV
Subjt:  VIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNV

Query:  YRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT
         RW+ + ++  P    M  FNSF++ + LI+   ++G  T
Subjt:  YRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein2.2e-2236.5Show/hide
Query:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKL
        +WN      +   +G F++ +     +G  WWLS +YGPA R+NR  FW+EL  +K  C   W+LGGDFNV RW  +TT++NP+   MR+FNSF+    L
Subjt:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKL

Query:  IEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF
        I+P  S+  +T    +       +D  L    + ++F
Subjt:  IEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF

A0A5A7TAQ1 LINE-1 retrotransposable element ORF2 protein4.4e-2338.57Show/hide
Query:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV
        +W+ L     + +EGTF++ +N    DG +   WWLS +YGP+  RNRK FW EL+ +K  C   W+L GDFNV R++ +T+++NPSK+ MR FN F+  
Subjt:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV

Query:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF
        + LI+P  S+  FT    ++      ID  L   ++ ++F
Subjt:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein7.6e-2337.86Show/hide
Query:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV
        +W+ L     + +EGTF++ +N    DG +   WWLS +YGP+  RNRK FW EL+ +K  C   W+L GDFN  R++ +T+++NPSK+ MR FN F+  
Subjt:  LWNSLTHEAIEAVEGTFTIFVNFKCCDGFN---WWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDV

Query:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF
        + LI+P  S+  FT    ++      ID  L   ++ ++F
Subjt:  AKLIEPTYSHGLFTQLCGKLMNNSESIDHILIACSFTSVF

A0A6J1CVN2 uncharacterized protein LOC1110146573.0e-3548.61Show/hide
Query:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG
        +N + IKS+WSSISIAW       +G +GGII+LW+ L+  A+E + G F+I V+FK  D F WWL+ VY P  ++ RK FW+EL  +   CG  W+LG 
Subjt:  VNQQVIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGG

Query:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT
        DFN+YRW+H+T+S NP +  M KFN F+D A LI+P  ++G +T
Subjt:  DFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT

A0A6J1E2G6 uncharacterized protein LOC1110254052.0e-2338.57Show/hide
Query:  VIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNV
        ++KS+WS+  I W+      +G+A GI+ILWN    +A E +EG F++ +NF   DGF +W+S +YGP++      FW+EL+ +   C  HW+L GDFNV
Subjt:  VIKSIWSSISIAWTFFIRANNGLAGGIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNV

Query:  YRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT
         RW+ + ++  P    M  FNSF++ + LI+   ++G  T
Subjt:  YRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYSHGLFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTAGAAAGGAGGTGGGGGAGATCTACGGGTGGACCTTCTCGGCCACTGGAACTTGGGCGGCGGTGGCGGTGGCGGAGAACGTAGTCGCCTTCTCCTCCTCCTT
GCTTGCAGTTCATATTGATAGGGGGAAAGTGACGGCGGTGGCGGCGGAGGAAGAGGAACAATCTTTGTGTGATAAAGGGAAGGCAGTGGGTGAGGAGGACGAGGAAGGTA
ACTCTTTCATTGTTAACGCGGTGGTAAATCAGCAGGTGATCAAATCCATATGGAGTTCTATAAGTATTGCTTGGACCTTCTTCATAAGAGCTAATAATGGTTTAGCTGGA
GGCATCATCATCCTCTGGAACTCCCTCACTCATGAAGCTATTGAAGCTGTGGAAGGTACATTTACTATTTTTGTTAATTTTAAATGTTGTGATGGATTTAATTGGTGGCT
GTCTGATGTTTATGGACCTGCTAGTAGAAGAAACCGTAAAGATTTTTGGAAAGAGCTTATACTTATAAAATACTTCTGCGGGCAACATTGGATGTTGGGAGGTGACTTCA
ACGTATATAGATGGACACATAAAACCACCTCCAGGAACCCATCTAAATACTGTATGAGGAAATTCAACTCCTTCGTTGATGTTGCGAAGCTTATAGAGCCAACATATTCA
CATGGTCTCTTCACCCAGTTATGTGGGAAACTTATGAATAACTCGGAATCCATCGATCACATCCTCATAGCTTGCAGCTTCACTTCGGTCTTTTGGGATTGTTTTCAACA
AGAAGTGTTGTTTTTCTCTCTAAATTCGCCGCCGTCTATGGCCGCCACTAGATCCCTTCACTCCGTTCCGCGGAAGCCCCCCAAGTTGCCATGGCCGGGAAAGTTTACCT
CTAAACGGGCATCGCCTCCTCCCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTAGAAAGGAGGTGGGGGAGATCTACGGGTGGACCTTCTCGGCCACTGGAACTTGGGCGGCGGTGGCGGTGGCGGAGAACGTAGTCGCCTTCTCCTCCTCCTT
GCTTGCAGTTCATATTGATAGGGGGAAAGTGACGGCGGTGGCGGCGGAGGAAGAGGAACAATCTTTGTGTGATAAAGGGAAGGCAGTGGGTGAGGAGGACGAGGAAGGTA
ACTCTTTCATTGTTAACGCGGTGGTAAATCAGCAGGTGATCAAATCCATATGGAGTTCTATAAGTATTGCTTGGACCTTCTTCATAAGAGCTAATAATGGTTTAGCTGGA
GGCATCATCATCCTCTGGAACTCCCTCACTCATGAAGCTATTGAAGCTGTGGAAGGTACATTTACTATTTTTGTTAATTTTAAATGTTGTGATGGATTTAATTGGTGGCT
GTCTGATGTTTATGGACCTGCTAGTAGAAGAAACCGTAAAGATTTTTGGAAAGAGCTTATACTTATAAAATACTTCTGCGGGCAACATTGGATGTTGGGAGGTGACTTCA
ACGTATATAGATGGACACATAAAACCACCTCCAGGAACCCATCTAAATACTGTATGAGGAAATTCAACTCCTTCGTTGATGTTGCGAAGCTTATAGAGCCAACATATTCA
CATGGTCTCTTCACCCAGTTATGTGGGAAACTTATGAATAACTCGGAATCCATCGATCACATCCTCATAGCTTGCAGCTTCACTTCGGTCTTTTGGGATTGTTTTCAACA
AGAAGTGTTGTTTTTCTCTCTAAATTCGCCGCCGTCTATGGCCGCCACTAGATCCCTTCACTCCGTTCCGCGGAAGCCCCCCAAGTTGCCATGGCCGGGAAAGTTTACCT
CTAAACGGGCATCGCCTCCTCCCTTCTAG
Protein sequenceShow/hide protein sequence
MCVRKEVGEIYGWTFSATGTWAAVAVAENVVAFSSSLLAVHIDRGKVTAVAAEEEEQSLCDKGKAVGEEDEEGNSFIVNAVVNQQVIKSIWSSISIAWTFFIRANNGLAG
GIIILWNSLTHEAIEAVEGTFTIFVNFKCCDGFNWWLSDVYGPASRRNRKDFWKELILIKYFCGQHWMLGGDFNVYRWTHKTTSRNPSKYCMRKFNSFVDVAKLIEPTYS
HGLFTQLCGKLMNNSESIDHILIACSFTSVFWDCFQQEVLFFSLNSPPSMAATRSLHSVPRKPPKLPWPGKFTSKRASPPPF