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CcUC08G150830 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC08G150830
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr08:19017434..19021410
RNA-Seq ExpressionCcUC08G150830
SyntenyCcUC08G150830
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]1.6e-0546Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0546Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0546Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]1.7e-0744Show/hide
Query:  GNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNA
        G L   D  K   I  +  E  I T   + DG  WWI+ +Y L NR   KSFW EL ++   CG  W+LAGDFNA
Subjt:  GNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNA

XP_026450589.1 uncharacterized protein LOC113350671 [Papaver somniferum]2.0e-0525.13Show/hide
Query:  GSATALAVVFDGNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHR------
        GS+  + +++D N   ++     +   L+V C       K D   W ++ +YG  N     SFW+ELD  C L    W + GDFN   K + ++      
Subjt:  GSATALAVVFDGNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHR------

Query:  KPLAEHLD--------------------------LANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEAGDLNDTDLYLRTSLKIE
        + + +  D                          L    R WN+ VFK    R  DI  +I+ +D   E G L++ D +    LK E
Subjt:  KPLAEHLD--------------------------LANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEAGDLNDTDLYLRTSLKIE

TrEMBL top hitse value%identityAlignment
A0A5A7TTA1 DUF4283 domain-containing protein7.6e-0646Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein7.6e-0646Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein7.6e-0646Show/hide
Query:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE
        +G +WW+S IYG A R+N   FW+EL+++  +C   WIL GDFN    +E
Subjt:  DGLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKRE

M5VS59 Reverse transcriptase domain-containing protein (Fragment)1.3e-0553.49Show/hide
Query:  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFN
        G  WW+SGIYG   +R   SFW+EL D+   CG+ W L GDFN
Subjt:  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFN

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)9.9e-0631.25Show/hide
Query:  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHRKPLAEHLDLANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEA
        G  WW+SGIYG   +R   SFW+EL D+   CG+ W L GDFN            +    +    RD+N  + + N    I ++    + + +E A
Subjt:  GLTWWISGIYGLANRRNCKSFWDELDDVCILCGECWILAGDFNAYAKREYHRKPLAEHLDLANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTCATCATCTCCATTTTCTTCTGCCGAGGCTGCTTTGCCAGGCTCACTTTTATAGGTGAATTATATATCGGCGCCGCCAATGCCAAGTGCGACGGGGGAGGAGG
AGAAGGGTCAGCCACGGCGCTTGCGGTGGTTTTCGACGGTAACCTTAGAGCCATGGATGCTACCAAAATAGCCAAAATTAGAATATTGGCCGTCGAATGCCCCATTCTCA
CGATACAAACTAAAGTTGATGGCTTAACATGGTGGATATCTGGTATTTATGGGCTAGCCAATCGTAGAAATTGTAAATCTTTCTGGGATGAGCTTGATGATGTGTGTATT
CTCTGTGGAGAATGCTGGATTCTTGCAGGTGACTTCAATGCATATGCCAAACGTGAATACCACCGGAAGCCACTGGCAGAACACCTGGATTTAGCAAATCACTTTCGTGA
CTGGAACCAACATGTCTTCAAAAAGAACCAAAACAGAGCCATTGATATCTCCAAACAGATTGAGTACATTGACGCCAAAGAGGAAGCTGGAGATTTAAATGATACTGATC
TATATCTTCGTACCTCCCTGAAAATAGAGCTACTAAACATATCCTTTATTAGAATCACAGAAATGGCAACAACTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATTCATCATCTCCATTTTCTTCTGCCGAGGCTGCTTTGCCAGGCTCACTTTTATAGGTGAATTATATATCGGCGCCGCCAATGCCAAGTGCGACGGGGGAGGAGG
AGAAGGGTCAGCCACGGCGCTTGCGGTGGTTTTCGACGGTAACCTTAGAGCCATGGATGCTACCAAAATAGCCAAAATTAGAATATTGGCCGTCGAATGCCCCATTCTCA
CGATACAAACTAAAGTTGATGGCTTAACATGGTGGATATCTGGTATTTATGGGCTAGCCAATCGTAGAAATTGTAAATCTTTCTGGGATGAGCTTGATGATGTGTGTATT
CTCTGTGGAGAATGCTGGATTCTTGCAGGTGACTTCAATGCATATGCCAAACGTGAATACCACCGGAAGCCACTGGCAGAACACCTGGATTTAGCAAATCACTTTCGTGA
CTGGAACCAACATGTCTTCAAAAAGAACCAAAACAGAGCCATTGATATCTCCAAACAGATTGAGTACATTGACGCCAAAGAGGAAGCTGGAGATTTAAATGATACTGATC
TATATCTTCGTACCTCCCTGAAAATAGAGCTACTAAACATATCCTTTATTAGAATCACAGAAATGGCAACAACTATGTAA
Protein sequenceShow/hide protein sequence
MIFIISIFFCRGCFARLTFIGELYIGAANAKCDGGGGEGSATALAVVFDGNLRAMDATKIAKIRILAVECPILTIQTKVDGLTWWISGIYGLANRRNCKSFWDELDDVCI
LCGECWILAGDFNAYAKREYHRKPLAEHLDLANHFRDWNQHVFKKNQNRAIDISKQIEYIDAKEEAGDLNDTDLYLRTSLKIELLNISFIRITEMATTM