CuGenDBv2

Gene ID	CcUC08G158190
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Transcription initiation factor TFIID subunit 10
Genome location	CicolChr08:26437984..26439668
RNA-Seq Expression	CcUC08G158190
Synteny	CcUC08G158190
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0016573 - histone acetylation (biological process) GO:0000124 - SAGA complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:1990841 - promoter-specific chromatin binding (molecular function)
InterPro domains	IPR003923 - Transcription initiation factor TFIID, 23-30kDa subunit

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598532.1 Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-31

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

XP_008445293.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo]

1.1e-31

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

XP_008445294.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X2 [Cucumis melo]

1.1e-31

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

XP_022962589.1 transcription initiation factor TFIID subunit 10 [Cucurbita moschata]

1.1e-31

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

XP_038886703.1 transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida]

1.1e-31

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPV6 Transcription initiation factor TFIID subunit 10

1.2e-31

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN +QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

A0A1S3BBV7 Transcription initiation factor TFIID subunit 10

5.5e-32

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

A0A1S3BD75 Transcription initiation factor TFIID subunit 10

5.5e-32

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

A0A6J1HHI7 Transcription initiation factor TFIID subunit 10

5.5e-32

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

A0A6J1KB50 Transcription initiation factor TFIID subunit 10

5.5e-32

97.33

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Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN SQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

SwissProt top hits

e value

%identity

Alignment

O04173 Transcription initiation factor TFIID subunit 10

4.2e-29

82.67

Show/hide

Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

O60171 Transcription initiation factor TFIID subunit 10

1.4e-11

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Query:  DAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYA
        D  L  FLA + +Y+P IPD L+++YL  SGF+C D RL +L+ +  QKF++DVA DA QY+
Subjt:  DAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYA

Q12962 Transcription initiation factor TFIID subunit 10

3.6e-12

51.72

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Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQ+
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

Q8K0H5 Transcription initiation factor TFIID subunit 10

3.6e-12

51.72

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Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQ+
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

Q9XZT7 Transcription initiation factor TFIID subunit 10b

1.8e-11

47.46

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Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYA
        LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQ++
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYA

Arabidopsis top hits

e value

%identity

Alignment

AT4G31720.1 TBP-associated factor II 15

3.0e-30

82.67

Show/hide

Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

AT4G31720.2 TBP-associated factor II 15

3.0e-30

82.67

Show/hide

Query:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY
        MN  QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQ+
Subjt:  MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQY

Sequences

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CDS sequence

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ATGAACATTAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCTCTCTCCGAGTTTCTAGCATCTTTAATGGAGTATACTCCCACTATTCCCGATGAG
TTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTTGTAGCAGATGTTGCAAGT
GATGCTCTCCAGTATGCTTTCTTTCTTCTCTCTCATTTTGCCTGA

mRNA sequence

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AAAATCGCGGAGTAATTCAAACGAGCTTGATTTAGAAGAGAGGGAAAACGAAGAAGAAGATGAACATTAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACG
CAGCTCTCTCCGAGTTTCTAGCATCTTTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACG
TTCGATTGATCAGGCTTGTCGCTGTTGCCACACAGAAGTTTGTAGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTTCTTTCTTCTCTCTCATTTTGCCTGA

Protein sequence

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MNISQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQYAFFLLSHFA

CcUC08G158190 (gene) of Watermelon (PI 537277) v1 genome