CuGenDBv2

Gene ID	CcUC09G167580
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	CicolChr09:4166187..4172766
RNA-Seq Expression	CcUC09G167580
Synteny	CcUC09G167580
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0005634 - nucleus (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

5.1e-98

63.16

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA
        PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + E EA
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA

Query:  EEDS
        EEDS
Subjt:  EEDS

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

5.6e-97

63.07

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA
        PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EA
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA

Query:  EAEEDS
        EAEEDS
Subjt:  EAEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

1.3e-96

62.66

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE
        PDP N GK RWVWDY+G P DIYETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E 
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE

Query:  EAEAEEDS
        EAEAEEDS
Subjt:  EAEAEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

7.9e-99

63.49

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA
        PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + +AEA
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEA

Query:  EEDS
        EEDS
Subjt:  EEDS

XP_038897233.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida]

4.2e-100

64.24

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPP+LLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEVIIGKVKES+  GL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VPV LLPS S+F 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE
        PD NNGGKLRWVW+Y+ VPCDIYETDEIRF+IHSI+YPAIPVEQPKERDSKF MEE+P+ENINVKAFAPM++TATIDHDGLGP+SWW+G GDVE+E EAE
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE

Query:  ED
        ++
Subjt:  ED

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

9.7e-95

61.72

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VPV L+PS SEFT
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE
        PD NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E E
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE

Query:  EDS
        EDS
Subjt:  EDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

9.7e-95

61.72

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VPV L+PS SEFT
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE
        PD NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E E
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAE

Query:  EDS
        EDS
Subjt:  EDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

5.7e-95

63.19

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLP+ SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEE-KPKENI-NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE
        PD  NGGK RWVWDY+G P DIYETDEI+FRIH+IEYPAIPVEQPKE + KF  EE +PKE+  NVKAFAPMIVT TID+DGLGP+SWWDGSGDV+ EAE
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEE-KPKENI-NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE

Query:  --AEEDS
          AEEDS
Subjt:  --AEEDS

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

2.7e-97

63.07

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA
        PDP NGGK RWVWDY+G P DIYETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EA
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEA

Query:  EAEEDS
        EAEEDS
Subjt:  EAEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

6.1e-97

62.66

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R+SLGFFEDI+VP+HLLPS SEF 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE
        PDP N GK RWVWDY+G P DIYETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E 
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEE

Query:  EAEAEEDS
        EAEAEEDS
Subjt:  EAEAEEDS

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

2.4e-18

25.26

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I   DG++   VVF LI+FRP+ GEV++GK+K   E G+   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    RV++ FF+DI +P  +L     F 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVP----CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
        PD     +  WVW  EG       ++Y    +EIRF+I S ++  I  ++ K   +    E        +++ +P  + A+   DGLG  +WW
Subjt:  PDPNNGGKLRWVWDYEGVP----CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

3.9e-16

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + P DG++   V F  +VF+P++GE++ G + +    G++ S
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

2.0e-20

25.85

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K     G+   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                     VSLGFF+DI +P   L   ++F 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGV--PCDIYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS
            +  +  WVW+YE      D+Y    +E+RFR+    +       P   ++    EE PK+       AP  +  +I   GLG LSWW  S
Subjt:  PDPNNGGKLRWVWDYEGV--PCDIYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

8.9e-21

26.46

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K     G+   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                     VSLGFF+DI +P   L   ++F 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
            +  +  WVW+YE      D+Y    +EIRFR+    +       P   ++    EE PK+       AP  +  +I   GLG LSWW
Subjt:  PDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

3.1e-21

26.8

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K     G+   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                     VSLGFF+DI +P   L   ++F 
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
            +  +  WVW+YE      D+Y    +EIRFR+    +       P   D+    EE PK+       AP  +  +I   GLG LSWW
Subjt:  PDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

1.7e-54

39.13

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRP+VGEVI  K KESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R++LGFF+DI+VP  L+P  +   
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE
        PDP N  ++ WVW+Y G P + Y  D   +I+FR+ SI YP++P E+ ++                 K FAPM+VT  +D DGLGP+SWWD    V++E
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

3.7e-46

37.77

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS
        MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRP+VGEVI  K KESD NGL   
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTS

Query:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT
                                                                                    R++LGFF+DI+VP  L+P  +   
Subjt:  KCRHSSSLPPSIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFT

Query:  PDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTAT
        PDP N  ++ WVW+Y G P + Y  D   +I+FR+ SI YP++P E+ ++                 K FAPM+VT +
Subjt:  PDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTAT

Sequences

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CDS sequence

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ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAA
GGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACAT
TGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAACGTCAAAGTGCCGCCATTCATCATCTCTTCCACCC
TCCATCAAGACCCGTAGACGCCTCAACCTGAAGATTGTGAAGCCACGATCTCTCATGCCGTCTCAGCAATTGTTCATGGAGTCAATTAGGTTCACATTGGTTCAGCCAGA
TCGGTTCAATCAGGCCAGTTCAACCAAACTAGTTCAATCAAGCCAGTTCAATCAGACTGGTTCAATTAGATCTGATTTCAAATCTACTCGTGTATCACTTGGATTTTTCG
AGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGC
GACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAA
ACCAAAAGAAAACATCAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGATGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCG
AGGAGGAGGCCGAGGCTGAGGAAGATTCCTAA

mRNA sequence

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TCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCTCTCTCACTTTTCAGCTTTACTGCCGGCTCCCTCTCTTCTGCGCCGCCGCCGTATTTATCCGTTCCGTATCGCC
GCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTC
TCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCT
TATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTC
GAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAGC
ATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTT
AGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGT
TCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAACGTCAAAGTGCCGCCATTCATCATCTCTT
CCACCCTCCATCAAGACCCGTAGACGCCTCAACCTGAAGATTGTGAAGCCACGATCTCTCATGCCGTCTCAGCAATTGTTCATGGAGTCAATTAGGTTCACATTGGTTCA
GCCAGATCGGTTCAATCAGGCCAGTTCAACCAAACTAGTTCAATCAAGCCAGTTCAATCAGACTGGTTCAATTAGATCTGATTTCAAATCTACTCGTGTATCACTTGGAT
TTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTA
CCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGA
GGAGAAACCAAAAGAAAACATCAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGATGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAG
ATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCCATTTAATGGGTATTCATTCATTCACATAATTATCATTTGGCATAGGCATTATAGACATGA
TAGTCACATATGATCAAGCGAGAAAAAGGTCCGCTTTTCACCTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAAT
TCATGTACTTTAAAAAAAACGGCTTCTTTTGTCTTCGTACTGTCAAACAGTGTTCATTTAATAAACTAACCTTTCAGC

Protein sequence

Show/hide protein sequence

MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRTSKCRHSSSLPP
SIKTRRRLNLKIVKPRSLMPSQQLFMESIRFTLVQPDRFNQASSTKLVQSSQFNQTGSIRSDFKSTRVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPC
DIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

CcUC09G167580 (gene) of Watermelon (PI 537277) v1 genome