; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC09G167660 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G167660
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranscription factor UPBEAT1
Genome locationCicolChr09:4267612..4268082
RNA-Seq ExpressionCcUC09G167660
SyntenyCcUC09G167660
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]2.7e-4274.42Show/hide
Query:  MGVSQETLLQIQLNMEDQK-TQDH-IIIKE-RNNSTG--SIWKKTLSKEEEKEEEE---NGKGKAKS-CNSTRRRRRRRRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED K TQD  IIIKE RN+S+   SIWKK   KEE  EEE+   N KGK KS CN+   RR  RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMEDQK-TQDH-IIIKE-RNNSTG--SIWKKTLSKEEEKEEEE---NGKGKAKS-CNSTRRRRRRRRRSRSNSLILKKRRR------

Query:  SSSDRIEQRVNTLRNLVPNMNNHEDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        SS+ RIEQRVN LRNLVPN +NH+DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  SSSDRIEQRVNTLRNLVPNMNNHEDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2157.79Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN
        MG    TLL +QLNME + TQD II        GSI KK+  +EE+K          KSC      RRRRR S+S    L K+ R SS RI QRV TLRN
Subjt:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN

Query:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI
        LVPNMNN  D+D +  GSLEQLFT TADYILSLQTRVR M+TLVDVLSG SS I
Subjt:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2454.61Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN
        MGV  ETLL +QLNM+ + +QD   ++E              ++E++E++E  +  AKS N         RR RS++ ++KKRR  SS RIEQRV+TLRN
Subjt:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN

Query:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        LVPNMNN+ ++ ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2354.61Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN
        MGV  ETLL +QLNM+ + +QD                +T  +E+++E++E     AKS N         RR RS++ ++KKRR  SS RIEQRV+TLRN
Subjt:  MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRN

Query:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        LVPNMNN+ ++ ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  LVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]7.3e-4070.83Show/hide
Query:  MGVSQETLLQIQLNMED-QKTQDHII----IKERNNSTGSIWKKTLSKEEEKEE-EENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRR----SSSDR
        MGVSQETLLQIQLNMED Q TQD II    I+  N++  S WKK   KEEE +E    GK    +CN    RR  RRRSRSNSLILKKR R    SSS R
Subjt:  MGVSQETLLQIQLNMED-QKTQDHII----IKERNNSTGSIWKKTLSKEEEKEE-EENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRR----SSSDR

Query:  IEQRVNTLRNLVPN--MNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        IEQRVNTLR+LVPN   +NH+D DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  IEQRVNTLRNLVPN--MNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

TrEMBL top hitse value%identityAlignment
A0A072VQ70 Putative transcription factor bHLH family9.0e-0439.34Show/hide
Query:  ERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRNLVPNMNNHEDDDESCVGSLEQLFTQTA
        E NN++  +W K L              + K    T++R +RR         L KRRR S   I++RV TL+ L+PN       DES    L+ LF +TA
Subjt:  ERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRNLVPNMNNHEDDDESCVGSLEQLFTQTA

Query:  DYILSLQTRVRLMKTLVDVLSG
        +YILSLQ RV +MK +VDVL+G
Subjt:  DYILSLQTRVRLMKTLVDVLSG

A0A0A0K6D9 Uncharacterized protein3.5e-4070.83Show/hide
Query:  MGVSQETLLQIQLNMED-QKTQDHII----IKERNNSTGSIWKKTLSKEEEKEE-EENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRR----SSSDR
        MGVSQETLLQIQLNMED Q TQD II    I+  N++  S WKK   KEEE +E    GK    +CN    RR  RRRSRSNSLILKKR R    SSS R
Subjt:  MGVSQETLLQIQLNMED-QKTQDHII----IKERNNSTGSIWKKTLSKEEEKEE-EENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRR----SSSDR

Query:  IEQRVNTLRNLVPN--MNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        IEQRVNTLR+LVPN   +NH+D DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  IEQRVNTLRNLVPN--MNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

A0A445F6P8 Transcription factor UPBEAT18.2e-0537.75Show/hide
Query:  MGVSQETLLQIQLNMED--QKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTL
        MG+S +T L +  +++D  Q T+++    + ++S G +W K L+ + +K      KG  +S    RR     RRS S        RR S + I +RV TL
Subjt:  MGVSQETLLQIQLNMED--QKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTL

Query:  RNLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
        ++LVPN ++           L+ LF QTADYILSLQTRVR+M+ +V VL+G
Subjt:  RNLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

A0A5A7TXU1 Transcription factor UPBEAT11.3e-4274.42Show/hide
Query:  MGVSQETLLQIQLNMEDQK-TQDH-IIIKE-RNNSTG--SIWKKTLSKEEEKEEEE---NGKGKAKS-CNSTRRRRRRRRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED K TQD  IIIKE RN+S+   SIWKK   KEE  EEE+   N KGK KS CN+   RR  RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMEDQK-TQDH-IIIKE-RNNSTG--SIWKKTLSKEEEKEEEE---NGKGKAKS-CNSTRRRRRRRRRSRSNSLILKKRRR------

Query:  SSSDRIEQRVNTLRNLVPNMNNHEDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        SS+ RIEQRVN LRNLVPN +NH+DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  SSSDRIEQRVNTLRNLVPNMNNHEDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

I1NHA0 BHLH transcription factor3.1e-0438Show/hide
Query:  MGV-SQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLR
        MG+ SQ +L+   L    Q T+++    + ++S G +W K L+ + +K      KG  +S    RR     RRS S        RR S + I +RV TL+
Subjt:  MGV-SQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLR

Query:  NLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
        +LVPN ++           L+ LF QTADYILSLQTRVR+M+ +V VL+G
Subjt:  NLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators3.1e-0436Show/hide
Query:  KGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDR-----IEQRVNTLRNLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS
        +G+ K       RR+R RR+    ++++ R+   + R     I +RV TL+ LVPN    E         L+ LF QTADYIL+L+ +V++M+T+V VL+
Subjt:  KGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDR-----IEQRVNTLRNLVPNMNNHEDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCACATCATCATTAAAGAGAGGAACAACTCAACTGGATCCATATG
GAAGAAAACATTATCAAAGGAAGAAGAAAAAGAAGAAGAAGAAAATGGCAAAGGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAA
GGAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCATCATCAGATAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGAAGAT
GATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTT
GTCTGGTCCTTCTTCTTCTATTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCACATCATCATTAAAGAGAGGAACAACTCAACTGGATCCATATG
GAAGAAAACATTATCAAAGGAAGAAGAAAAAGAAGAAGAAGAAAATGGCAAAGGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAA
GGAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCATCATCAGATAGAATAGAGCAAAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGAAGAT
GATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAGACAGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTT
GTCTGGTCCTTCTTCTTCTATTGATGAGTGA
Protein sequenceShow/hide protein sequence
MGVSQETLLQIQLNMEDQKTQDHIIIKERNNSTGSIWKKTLSKEEEKEEEENGKGKAKSCNSTRRRRRRRRRSRSNSLILKKRRRSSSDRIEQRVNTLRNLVPNMNNHED
DDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE