CuGenDBv2

Gene ID	CcUC09G168430
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome location	CicolChr09:4821919..4825337
RNA-Seq Expression	CcUC09G168430
Synteny	CcUC09G168430
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

1.1e-162

89.31

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y KSKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

2.9e-160

88.36

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y KSKGNVSF+S  R PW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

1.5e-161

88.68

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

1.5e-161

88.68

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

1.0e-165

91.56

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        MSATFPTSS+VSSSHSNEFIKV YLKSKGNVSFDSH RVPWKFMR I PSLGD CI LKSTSIKCVKPTYQSLF+D+S+ITDW D +GDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRV K V DYPFGTPVQISVDVTRKEK+LRLDGIVKTVITLNCYRCCE APEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQDMFKTYDGNSDEDDEEL DLDDQLYFPL+EKEIDISKNIRDILHLEITMNAIC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKNFK
        KKNDFGPLGNLK+QMQKN K
Subjt:  KKNDFGPLGNLKRQMQKNFK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

5.9e-159

86.79

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHSNEFI V Y KSKG VSFDSHFRVPW+ +R I PSLGDPCIK+KST+IKCVKPTYQSLF+D+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK K+LRLDGIVKTVITLNCY CCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+G+DMFKT +GNSDEDDEEL DLDDQLYFP + KEIDISKNIRDILHLEITMN IC PGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLG+LKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

7.5e-162

88.68

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

7.5e-162

88.68

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

A0A5A7VN29 Uncharacterized protein

5.2e-163

89.31

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y KSKGNVSF+SHFRVPW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

A0A5D3D2J4 Uncharacterized protein

1.4e-160

88.36

Show/hide

Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHS EFI V Y KSKGNVSF+S  R PW+FMR I PSLGDPCIK+KSTSIKCVKPTYQSLF+D+S+ITDW DQEGDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK V DYPFGTPVQISVDVTRK+K+LRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC PGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLKRQMQKN
        KKNDFGPLGNLKR+MQ N
Subjt:  KKNDFGPLGNLKRQMQKN

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

3.8e-54

51.3

Show/hide

Query:  VDQEGDIEEMG--SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLR-VTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL
        V+ E D  + G  SPWEGAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T   T     TPV +SVDVTR+  RLRLDGIV+TVITL
Subjt:  VDQEGDIEEMG--SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLR-VTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITL

Query:  NCYRCCEPAPECVFSNFSIVLSEEPI-EEPDVINMGII-------NGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAI
         C+RC EPAP+ +F+NFS++L+E+P+ EEPD   +G I        G  +    DG+ D       D DD+L+FP  +KEIDISK+IRD++HLEIT++A+
Subjt:  NCYRCCEPAPECVFSNFSIVLSEEPI-EEPDVINMGII-------NGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAI

Query:  CGPGCKGMCLNCGINLN-TGSCNCSKQAVK
        C P CKG+CL CG NLN T SC C  + V+
Subjt:  CGPGCKGMCLNCGINLN-TGSCNCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.4e-80

58.4

Show/hide

Query:  IKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPV
        IKL   +   +  + +S  +  ++  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK V DYP GTPV
Subjt:  IKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPV

Query:  QISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI
        Q+SVDV RK+K+LRLDGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+   D +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI

Query:  SKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK
        SK+IRD++HLEIT+ AIC   CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  SKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

9.9e-82

58.4

Show/hide

Query:  IKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPV
        IKL   +   +  + +S  +  ++  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK V DYP GTPV
Subjt:  IKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPV

Query:  QISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI
        Q+SVDV RK+K+LRLDGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+   D +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI

Query:  SKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK
        SK+IRD++HLEIT+ AIC   CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  SKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQMQK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCAGCCACATTCCCCACATCATCCTTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGTTCTCTACTTGAAATCCAAAGGGAATGTTTCTTTCGATTCG
CATTTCCGAGTTCCATGGAAATTTATGAGATATATTCCGCCAAGCTTGGGAGACCCATGTATTAAGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTAT
CAATCCCTTTTTGATGACGATTCAGTAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGAAGGAGCAGTTATTTACAAGAGG
AACTCTTCAGTTTCTCATGTGGAGTATTGTACAACATTAGAGAGGCTTGGATTAGAGAAGCTTTCAACTGATGTCTCGAAATCTAGAGCATCAATGATGGGTCTA
CGCGTAACGAAGGCTGTGACAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAA
ACTGTCATCACTCTCAATTGTTATAGGTGCTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTGTACTAAGCGAAGAACCGATTGAAGAACCTGAT
GTCATAAATATGGGAATCATTAATGGGCAGGATATGTTCAAGACGTATGATGGAAATAGTGATGAAGATGATGAAGAGTTATTTGATTTGGATGATCAACTCTAT
TTTCCTCTTGTAGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCAATATGTGGTCCGGGATGCAAAGGTATG
TGTCTGAATTGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATG
CAGAAAAATTTTAAGACTTAG

mRNA sequence

Show/hide mRNA sequence

ACTGAAAGAAAAAGATGTGACTAAAGCCACGGACAGAGTTTTTCTGCACAGCGTCACCAAAATTTCTACCATTTTCGCCAACTCAGTTAATCTTCGGATTGGGTC
ACAAACTGTTTGAAGAAATGCCCAACTGAATTACCCAGTTAACTTGTTTGGATTTTAATCTGGCCTAGTTTCTCTGATGTTCTTGTAGGATGGAATCATTTTTGC
TCGACTTCATTAGCTGATTAGTTTATATATATTGCAGAGCTTGCGTTATTTGTATCTAGGGATATTCCCTTATCCAATTTCTTTGTGCAGTATTTAAGATGTCAG
CCACATTCCCCACATCATCCTTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGTTCTCTACTTGAAATCCAAAGGGAATGTTTCTTTCGATTCGCATTTCC
GAGTTCCATGGAAATTTATGAGATATATTCCGCCAAGCTTGGGAGACCCATGTATTAAGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCC
TTTTTGATGACGATTCAGTAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGAAGGAGCAGTTATTTACAAGAGGAACTCTT
CAGTTTCTCATGTGGAGTATTGTACAACATTAGAGAGGCTTGGATTAGAGAAGCTTTCAACTGATGTCTCGAAATCTAGAGCATCAATGATGGGTCTACGCGTAA
CGAAGGCTGTGACAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAGGTTGAGGCTGGATGGGATAGTTAAAACTGTCA
TCACTCTCAATTGTTATAGGTGCTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTGTACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAA
ATATGGGAATCATTAATGGGCAGGATATGTTCAAGACGTATGATGGAAATAGTGATGAAGATGATGAAGAGTTATTTGATTTGGATGATCAACTCTATTTTCCTC
TTGTAGAGAAAGAAATAGATATATCAAAGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCAATATGTGGTCCGGGATGCAAAGGTATGTGTCTGA
ATTGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAA
ATTTTAAGACTTAGAATGCAAGAACAGGTGTTCCTTTTGATCAAATCCTTTCTTTTAATCTGTCTTATCTTGGCTGAGCTCTTTTACAACCATATTTTTGTATTC
TTATTCCATTTGCATTTTAACCTTTGTTTGAGTTAGAGCCATCTGCAATGCAATTCTGAAAAATATCTGTTATTACTCTACTCGTTTGCCTGAACCCCCCGAAAC
TCCAGTTTCTGATTGCAGTTTCTTAGTTTTGATTGAATGCTTGAATCTTGCACAATGGCAAGTGAGAGTCAAATAGAAACTTATTATCTGGCTATATTCTAGCAT
GGCTGCTTCTATTAACAAGTTTTTTAGGAAGGAATACTGTCATTACAGATTTACAGCTTGAGTTTTCATGGAGATTCACATATGATCATTACACTACTATTTTGT
TCCAGTGATGAGTATTAAGCCTGTTCACTTACCATAGAAAATGCAGTTAGGAAGAAGAAATGAGAACTTTGTTACGGGTATTGAGAGACGACCAATTCTAGCCAA
CACCTGTTAATTTAGACCAGATTACGTACTTTCATAACATAATAAAAAGTTTGGTGGTAATCAATTTTGCTATTTTGCCACTAAGCATTGGAATATTTGAACAAT
TTCATATGCCATATTAACAATGGGACATCAATAAATCAATAATTTAATTAATTATATAAAATATGCAAGTAGAAAAAATTGAGAATAAATAGTATGCATTGACAT
AAAAAATCTTCAAAGAGCAAAAACATCAAGAAAATCTTAAAAGAGGAAGAAAACTAGAGAATGAAGTAATAGAGGGAAAATATGTAAATGAATTAACGAAAC

Protein sequence

Show/hide protein sequence

MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFDSHFRVPWKFMRYIPPSLGDPCIKLKSTSIKCVKPTYQSLFDDDSVITDWVDQEGDIEEMGSPWEGAVIYKR
NSSVSHVEYCTTLERLGLEKLSTDVSKSRASMMGLRVTKAVTDYPFGTPVQISVDVTRKEKRLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPD
VINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICGPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLKRQM
QKNFKT

CcUC09G168430 (gene) of Watermelon (PI 537277) v1 genome