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CcUC09G169190 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G169190
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionclassical arabinogalactan protein 26
Genome locationCicolChr09:5380085..5380492
RNA-Seq ExpressionCcUC09G169190
SyntenyCcUC09G169190
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5388.89Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]2.2e-5388.15Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]8.4e-5387.41Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASI AFSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+  E+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]2.9e-5388.15Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASI  FSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]7.9e-5187.59Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFS--PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL
        MAS FSLYIPIFMAYTASIL FS ASYPNY P LISSISAAPEFS  PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM L
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFS--PSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL

Query:  SPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
         PSQSLPFSA  +LN  GW WPVLVALTTALA EL R
Subjt:  SPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein6.8e-4885.29Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA-LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS
        MAS FSLYIPIFMAYTAS+  FSFASYPN FP  LISSISAAPEF  SPSP+PASDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA-LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS

Query:  PSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        PSQSLPFS  A LNSGGW   V VALTT L AELRR
Subjt:  PSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

A0A1S3BRG9 classical arabinogalactan protein 261.0e-4377.7Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA----LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MAS FSLYIPIFMAYTAS   F+FASYPNYFP     + SSISAAPEFSP+P+PS  SDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA----LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        PLSP+ S+PFSA A LNS GW   V +AL TALAAEL R
Subjt:  PLSPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

A0A5A7UQZ3 Classical arabinogalactan protein 261.0e-4377.7Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA----LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        MAS FSLYIPIFMAYTAS   F+FASYPNYFP     + SSISAAPEFSP+P+PS  SDISPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPA----LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        PLSP+ S+PFSA A LNS GW   V +AL TALAAEL R
Subjt:  PLSPSQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

A0A6J1GPB2 classical arabinogalactan protein 261.1e-5388.15Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDI+PLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

A0A6J1JX46 classical arabinogalactan protein 264.1e-5387.41Show/hide
Query:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        MAS FSLYIPIFMAYTASI AFSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPL P
Subjt:  MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+  E+ R
Subjt:  SQSLPFSAVATLNSGGWFWPVLVALTTALAAELRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 261.2e-0438.52Show/hide
Query:  IPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM
        + +F A+T  +L+    +  + F   +S+ISAAP F P       + +P+ + D SPLFPTPG + + PS      +PTIPSS SPPNPD +   P P +
Subjt:  IPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQS-LPFSAVATLNSGGWFWPVLVALTTALA
         +SP  S LP S+   L S      +LV L   LA
Subjt:  PLSPSQS-LPFSAVATLNSGGWFWPVLVALTTALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTGCCCTCATTTCTTC
CATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCTCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGCTACCCTTCCGCCGTCCTCCTTGC
CTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGTTGCT
ACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTGCCCTCATTTCTTC
CATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCTCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGCTACCCTTCCGCCGTCCTCCTTGC
CTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGTTGCT
ACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGATGA
Protein sequenceShow/hide protein sequence
MASTFSLYIPIFMAYTASILAFSFASYPNYFPALISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSAVA
TLNSGGWFWPVLVALTTALAAELRR