CuGenDBv2

Gene ID	CcUC09G171920
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	spindle and kinetochore-associated protein 1 homolog
Genome location	CicolChr09:8250956..8257163
RNA-Seq Expression	CcUC09G171920
Synteny	CcUC09G171920
Gene Ontology terms	GO:0000278 - mitotic cell cycle (biological process) GO:0007059 - chromosome segregation (biological process) GO:0031110 - regulation of microtubule polymerization or depolymerization (biological process) GO:0051301 - cell division (biological process) GO:0000940 - condensed chromosome outer kinetochore (cellular component) GO:0005876 - spindle microtubule (cellular component) GO:0072686 - mitotic spindle (cellular component) GO:0008017 - microtubule binding (molecular function)
InterPro domains	IPR009829 - Spindle and kinetochore-associated protein 1 IPR042031 - SKA1 microtubule binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593001.1 Spindle and kinetochore-associated protein 1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

9.7e-26

82.67

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ + +W+   ELRDIA T+AVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

XP_008458015.1 PREDICTED: spindle and kinetochore-associated protein 1 homolog isoform X3 [Cucumis melo]

3.3e-26

80.77

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Query:  LASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +  +++ +  W+   ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRH+GRISETRIGHQRVILLLKPS
Subjt:  LASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

XP_022960263.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita moschata]

9.7e-26

82.67

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ + +W+   ELRDIA T+AVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

XP_023515285.1 spindle and kinetochore-associated protein 1 homolog [Cucurbita pepo subsp. pepo]

9.7e-26

82.67

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ + +W+   ELRDIA T+AVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

XP_038877293.1 spindle and kinetochore-associated protein 1 homolog [Benincasa hispida]

2.5e-26

85.33

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ +  W+   ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

TrEMBL top hits

e value

%identity

Alignment

A0A1R3I7S5 Uncharacterized protein

4.8e-23

75.68

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP
        +++ +  W+   ELRDIA T+AVKGK+FFLE+DM+GPSLKLDNTGKAILTVLRHLGRISETRIGH RVI+LLKP
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP

A0A1S3C6Z1 spindle and kinetochore-associated protein 1 homolog isoform X3

1.6e-26

80.77

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Query:  LASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +  +++ +  W+   ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRH+GRISETRIGHQRVILLLKPS
Subjt:  LASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

A0A6J1DLG8 spindle and kinetochore-associated protein 1 homolog

2.0e-24

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ +  W    ELRDIA  +AVKGKYFFLETDM+GPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

A0A6J1H8L1 spindle and kinetochore-associated protein 1 homolog

4.7e-26

82.67

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ + +W+   ELRDIA T+AVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

A0A6J1KRI3 spindle and kinetochore-associated protein 1 homolog

6.1e-26

81.33

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS
        +++ + +W+   ELRDIA T+AVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQR+ILLLKPS
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

SwissProt top hits

e value

%identity

Alignment

B4FGS2 Spindle and kinetochore-associated protein 1 homolog

6.3e-20

64.38

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK
        +++ +  W+   ELRDIAA+ AVKG +FFLE D++GP LKLDNTGKAILTVLRHLGR  E RIGH RV +L K
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK

B8B624 Spindle and kinetochore-associated protein 1 homolog

2.2e-20

64.38

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Query:  RRIGDGRWQE---LRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK
        +++ +  W++   LRDIAA ++VKGK+FFLETD++GP LKLD TGKAILTVLRHLGR  ETRIGH RV +L K
Subjt:  RRIGDGRWQE---LRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK

Q7XAM0 Spindle and kinetochore-associated protein 1 homolog

1.7e-20

64.38

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Query:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK
        +++ +  W+   ELRDIAA ++VKG++FFLETD++GP LKLD TGKAILTVLRHLGR  ETRIGH RV +L K
Subjt:  RRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLK

Q9LZZ7 Spindle and kinetochore-associated protein 1 homolog

4.7e-23

68.42

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Query:  ASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP
        + +++ +  W+   +LRDI    AVKGK+FFLETDM+GPSLKLDNTGKAILTVLRHLGRISETRIG  RVI+L+KP
Subjt:  ASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60660.1 unknown protein

3.3e-24

68.42

Show/hide

Query:  ASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP
        + +++ +  W+   +LRDI    AVKGK+FFLETDM+GPSLKLDNTGKAILTVLRHLGRISETRIG  RVI+L+KP
Subjt:  ASRRIGDGRWQ---ELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKP

Sequences

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CDS sequence

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mRNA sequence

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ATGCTTGGTGAGTTGGAGAGAGCAAACAACGGTTGTTTGGCAAGTCGGCGAATTGGCGACGGTAGGTGGCAGGAGCTAAGAGATATTGCAGCAACGGATGCAGTGAAAGG
AAAATATTTCTTTCTTGAAACCGACATGAGAGGACCTTCATTGAAACTTGACAACACTGGAAAGGCCATACTAACTGTCCTACGTCACCTTGGACGTATAAGCGAAACTC
GGATTGGACATCAACGTGTAATCTTACTATTAAAACCATCATAAATAACCTTGCATTTACTTGGACACAAGATTACAAAGTCTTGCATCACTGAAAGTCTAGCCTGTACG
AAAGAGAATCAACTATATACAATTCCAACAATCCGTTTCTCAAAGATTCATCATCAGAGGCGTACATATCAATTGTTTGGAGAAGTCTTGTACACATTATCCTCTCTACA
TTGCCATCAACATTGCTCACATTATCTCTAGGTACGTACTCCTTGTCCCTTATTCGACCAACTACCTTAGTGCATTTTTCATTTCATGAATGAATTCTTTCACATTCCAT
CTTTGACCACCCGTACAAGTCTCTTGGACAGGAGTAGTGTTGAGAACGGACAATGTTGATTTTTTGTACCATGATTTGGTCAATGTTCAAGTTGTTTCTTCGGATGTCAT
TTTTGATCTTGCGAGATTGATGGACAATGTTGGTTTCCTATGGTCATTTTCGACCCTTCTTTCTTGTCATGCTGCCCGCCCTCCGCTGCCGGCGTTGTTTCCTCCGGCAG
CCATTTCGGCTTTCCTCGCCGTCTTCTCCTGAAGAGCTTTTGCATCCCTTTGACGTCGCTGTTCAGGAGTCAACCCGTCGTTTCTTGGTTGCTTAGACTTATTTCCAGCC
CTCGCTTGAGCCCTTTCTCGATCTCGCTCTCTCTGGTTTCCGCGTTCGCTTTAGTTAAAGACTAAACAAAAATCACATAAATTTCAATGAAAAAAAAAAAATCCCACAAA
GATCGCTCTCTAATTATCCTAACTCCATCCCTTTTCTAGCAAAAATCATGGATCCATCAGCAGCAGCAGCTATTGAAGAAATCGAATCACTGAAATCTTCAAAACAAAAT
TTAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAGAAAGAAAAAAAAGAAAGAAAATCCTCTGATTCTACTTCTCTCATCCTCTGTTTCTTAAAGGAACAGAAAAC
AAAGAAGAAGAAATGAAGAAATGAAGGATATGAGTCATAGTGAAGAATGGAAGTTGATACTGAAAGAAAAAATGAGAGGAAACGAATGAAATTTGTTGACGATGGGAATT
GAAAAGGCGAAGGATATATAAAAGGAAGAAAAGTTAAAACGTTAATCCGCCACTCGATCTCAATGGAACTCTCCAGAAACAACCCTCAGATTCCCCG

Protein sequence

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MLGELERANNGCLASRRIGDGRWQELRDIAATDAVKGKYFFLETDMRGPSLKLDNTGKAILTVLRHLGRISETRIGHQRVILLLKPS

CcUC09G171920 (gene) of Watermelon (PI 537277) v1 genome