; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC09G172010 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G172010
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionrRNA N-glycosidase
Genome locationCicolChr09:8328111..8328587
RNA-Seq ExpressionCcUC09G172010
SyntenyCcUC09G172010
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0035821 - modification of morphology or physiology of other organism (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
GO:0090729 - toxin activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR017989 - Ribosome-inactivating protein type 1/2
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445788.1 PREDICTED: nigrin b-like [Cucumis melo]7.1e-4360.65Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        M SL FYI+ FL LA+  I GNQ S  S +L  + YKNFI  IR+ LT+NT +LY IPILK+S+PP+QRF+T  + N  DETI+LAIDKVNLGV+GY SN
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NTSY+FLDAP+ AF +VFP TCRV+L F S+Y+SIE  + TTR + LLG +P+ S
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

XP_008458115.1 PREDICTED: nigrin b-like [Cucumis melo]1.6e-5070.86Show/hide
Query:  VFYIVVFLPLASCGIKGNQLSFLSLN--LEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNT
        +FYIVV L LA+  I+GN LS    N   +AN+YK F+Q +R S+ +NT QLYGIPILK S PPSQRF TF+L N IDETITLA+DKVNL VVGYLSNNT
Subjt:  VFYIVVFLPLASCGIKGNQLSFLSLN--LEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNT

Query:  SYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM
        SYMFLDAPIEAF+VVFPSTCRVI+DFYSDY+SIE  A+TTR E LLG+DP+
Subjt:  SYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM

XP_011656527.1 seed lectin [Cucumis sativus]6.6e-4159.62Show/hide
Query:  MRSLVFYIVV-FLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS
        M SL FYI++ FL LA+  I GNQLS  S +L  + YKNFI  IR+ LT+NT +LY IPIL++S+PP+QRF+   + N  DETI+LAID+VNLGVVGY S
Subjt:  MRSLVFYIVV-FLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS

Query:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NN SY+FLDAP  A  VVFP TCRV+L F SDY+SIE  + TTR + LLG +P+ S
Subjt:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

XP_038877566.1 seed lectin-like [Benincasa hispida]3.2e-5980.39Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        MRSLV YIVVFL LA+C I+GNQLS  SL+  ANDYK+FIQ IR SLTQNTYQLYGIP+LK  VPP +RF TF LTN IDETITLAIDKVNLGVVGYLSN
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM
        N SYMFL+AP EAFRVVFPSTCRVILDF SDY+SIE  ASTTRQEI+LG+DPM
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM

XP_038884101.1 seed lectin-like [Benincasa hispida]7.3e-4060.9Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQ-LSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS
        M SL FYI+VFL LA+  I GNQ L   S +L  + YKNFI  IR  LT+NT +LY IPILKNS+PP++ FIT  L NA +ETI LAID VNLGVVGY S
Subjt:  MRSLVFYIVVFLPLASCGIKGNQ-LSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS

Query:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NNTSY+F +AP EA  +VFPSTCRV+L F SDY+SIE  +  +R + LLG DP+ S
Subjt:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

TrEMBL top hitse value%identityAlignment
A0A0A0K979 rRNA N-glycosidase3.2e-4159.62Show/hide
Query:  MRSLVFYIVV-FLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS
        M SL FYI++ FL LA+  I GNQLS  S +L  + YKNFI  IR+ LT+NT +LY IPIL++S+PP+QRF+   + N  DETI+LAID+VNLGVVGY S
Subjt:  MRSLVFYIVV-FLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLS

Query:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NN SY+FLDAP  A  VVFP TCRV+L F SDY+SIE  + TTR + LLG +P+ S
Subjt:  NNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

A0A1S3BDI7 rRNA N-glycosidase3.4e-4360.65Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        M SL FYI+ FL LA+  I GNQ S  S +L  + YKNFI  IR+ LT+NT +LY IPILK+S+PP+QRF+T  + N  DETI+LAIDKVNLGV+GY SN
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NTSY+FLDAP+ AF +VFP TCRV+L F S+Y+SIE  + TTR + LLG +P+ S
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

A0A1S3C7Q1 rRNA N-glycosidase7.6e-5170.86Show/hide
Query:  VFYIVVFLPLASCGIKGNQLSFLSLN--LEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNT
        +FYIVV L LA+  I+GN LS    N   +AN+YK F+Q +R S+ +NT QLYGIPILK S PPSQRF TF+L N IDETITLA+DKVNL VVGYLSNNT
Subjt:  VFYIVVFLPLASCGIKGNQLSFLSLN--LEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNT

Query:  SYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM
        SYMFLDAPIEAF+VVFPSTCRVI+DFYSDY+SIE  A+TTR E LLG+DP+
Subjt:  SYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM

A0A5D3D0Q4 rRNA N-glycosidase3.4e-4360.65Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        M SL FYI+ FL LA+  I GNQ S  S +L  + YKNFI  IR+ LT+NT +LY IPILK+S+PP+QRF+T  + N  DETI+LAIDKVNLGV+GY SN
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        NTSY+FLDAP+ AF +VFP TCRV+L F S+Y+SIE  + TTR + LLG +P+ S
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

A0A6J1JQR5 rRNA N-glycosidase2.0e-3554.43Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        MRSL  YI+ FL +A+  I+GN L F S + + + YKNFIQ +R+  T NT  LY IPILK+SVPPSQRF+T  L N   E I +A+D + L  VGY SN
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLSLPS
        +TSY+F DAP  AF  VFPSTCRV+L F SD++SIE  A+T+R + LLG  P  S  S
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLSLPS

SwissProt top hitse value%identityAlignment
P09989 Ribosome-inactivating protein alpha-trichosanthin1.7e-1536.81Show/hide
Query:  IVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNTSYMFL
        +++ L L +  ++G+ +SF      ++ Y  FI  +R++L  N  +LY IP+L++S+P SQR+    LTN  DETI++AID  N+ ++GY + +TSY F 
Subjt:  IVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNTSYMFL

Query:  DA-PIEAFRVVFPSTCR-VILDFYSDYQSIETKASTTRQEILLG
        +A   EA + VF    R V L +  +Y+ ++T A   R+ I LG
Subjt:  DA-PIEAFRVVFPSTCR-VILDFYSDYQSIETKASTTRQEILLG

P29339 Ribosome-inactivating protein momordin II1.9e-1432.24Show/hide
Query:  LVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNTS
        L+ ++++ + +     KG+ ++F      A  Y  FI+  R +L   ++++Y IP+L +++  S+RFI   LT+   ETI++AID  N+ VV Y + + S
Subjt:  LVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNTS

Query:  YMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS
        Y F ++P EA+ ++F  T ++ L +  +Y++++T A   R+ I LG  P LS
Subjt:  YMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLS

P33183 Nigrin b4.8e-1836.77Show/hide
Query:  LVFYIVVFLPLASCGIKGNQLSFLSLNLE---ANDYKNFIQFIRRSLTQNTYQLYGIPILK--NSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYL
        L FYIVV L + S GI+G     +S NL+   +  Y++F+  +R+++   TY++ G+P+L+  + V    RF+   LTN    T+TLA+D  NL VV + 
Subjt:  LVFYIVVFLPLASCGIKGNQLSFLSLNLE---ANDYKNFIQFIRRSLTQNTYQLYGIPILK--NSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYL

Query:  SNNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM
         N  SY F DA       +F  T +  L F  +Y ++ET A+T R+ I LG  P+
Subjt:  SNNTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPM

P98184 Ribosome-inactivating protein bryodin II2.4e-1735.26Show/hide
Query:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN
        MRS+ FY V+ L + +   +   ++F  +      YK FI+ +R  LT  T ++Y IP+L+N+     RF    LTN   E++T+A+D VN+ VV Y + 
Subjt:  MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSN

Query:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKAS-TTRQEILLGYDPMLS
        NT+Y   DA  EA  V+F     V L +  +Y  +ET A   +R+ I LG+  + S
Subjt:  NTSYMFLDAPIEAFRVVFPSTCRVILDFYSDYQSIETKAS-TTRQEILLGYDPMLS

U3KRF8 Seed lectin (Fragments)2.1e-2146.03Show/hide
Query:  EAND--YKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGY--LSNNTSYMFLDAPIEAFRVVFPSTCRVILD
        EAN   YK FI  +R  L   TY+LYGIP+LK+S+  S RF    LT+  DE+ITLAID  ++  V Y    ++ SY FL+AP  AF  +F  T + +L+
Subjt:  EAND--YKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGY--LSNNTSYMFLDAPIEAFRVVFPSTCRVILD

Query:  FYSDYQSIETKASTTRQEILLGYDPM
        F + ++S+E  A TTRQ I+LG DP+
Subjt:  FYSDYQSIETKASTTRQEILLGYDPM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCTTTAGTATTTTACATTGTTGTTTTTCTTCCTCTAGCCAGTTGTGGCATTAAGGGCAACCAACTCTCTTTCTTATCCTTGAATTTAGAGGCCAATGATTACAA
GAACTTCATTCAATTTATACGTCGTTCTCTCACTCAAAATACCTATCAATTATACGGTATACCCATCTTGAAAAACTCAGTTCCTCCTTCTCAACGTTTCATCACATTTG
CCCTCACCAATGCAATTGATGAAACCATCACTCTTGCAATAGACAAGGTGAATCTTGGAGTTGTAGGATATCTTTCAAACAACACTTCCTATATGTTTCTTGATGCCCCA
ATAGAAGCTTTTCGAGTTGTTTTTCCTTCGACTTGTCGGGTCATTCTTGATTTCTATAGCGACTATCAATCCATTGAGACTAAAGCCAGTACTACTAGACAAGAAATTCT
CCTTGGATATGATCCTATGCTTTCACTACCATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATCTTTAGTATTTTACATTGTTGTTTTTCTTCCTCTAGCCAGTTGTGGCATTAAGGGCAACCAACTCTCTTTCTTATCCTTGAATTTAGAGGCCAATGATTACAA
GAACTTCATTCAATTTATACGTCGTTCTCTCACTCAAAATACCTATCAATTATACGGTATACCCATCTTGAAAAACTCAGTTCCTCCTTCTCAACGTTTCATCACATTTG
CCCTCACCAATGCAATTGATGAAACCATCACTCTTGCAATAGACAAGGTGAATCTTGGAGTTGTAGGATATCTTTCAAACAACACTTCCTATATGTTTCTTGATGCCCCA
ATAGAAGCTTTTCGAGTTGTTTTTCCTTCGACTTGTCGGGTCATTCTTGATTTCTATAGCGACTATCAATCCATTGAGACTAAAGCCAGTACTACTAGACAAGAAATTCT
CCTTGGATATGATCCTATGCTTTCACTACCATCGTAG
Protein sequenceShow/hide protein sequence
MRSLVFYIVVFLPLASCGIKGNQLSFLSLNLEANDYKNFIQFIRRSLTQNTYQLYGIPILKNSVPPSQRFITFALTNAIDETITLAIDKVNLGVVGYLSNNTSYMFLDAP
IEAFRVVFPSTCRVILDFYSDYQSIETKASTTRQEILLGYDPMLSLPS