CuGenDBv2

Gene ID	CcUC09G173360
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	CicolChr09:9892200..9895291
RNA-Seq Expression	CcUC09G173360
Synteny	CcUC09G173360
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0016310 - phosphorylation (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009536 - plastid (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0016651 - oxidoreductase activity, acting on NAD(P)H (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0016301 - kinase activity (molecular function) GO:0008289 - lipid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR038662 - F1F0 ATP synthase subunit C superfamily IPR035921 - F/V-ATP synthase subunit C superfamily IPR002379 - V-ATPase proteolipid subunit C-like domain IPR000454 - ATP synthase, F0 complex, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

GAY64713.1 hypothetical protein CUMW_235570 [Citrus unshiu]

2.7e-15

96.23

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD++
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVS

KAF5950519.1 hypothetical protein HYC85_012512 [Camellia sinensis]

2.7e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR+ SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

KAG6735379.1 hypothetical protein POTOM_061996 [Populus tomentosa]

2.7e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR+ SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

KAG9438744.1 hypothetical protein H6P81_021282 [Aristolochia fimbriata]

3.5e-15

63.54

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD-----VSSGMK--EQKRSSEGLITESYDQPTFIKFE-KGDEYKRN
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD     + S ++  E+ R  E L +    +    K E + DE++ N
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD-----VSSGMK--EQKRSSEGLITESYDQPTFIKFE-KGDEYKRN

YP_009427199.1 ATP synthase CFO C subunit [Onoclea sensibilis]

3.5e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR  SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

TrEMBL top hits

e value

%identity

Alignment

A0A248R9Z5 ATP synthase subunit c, chloroplastic

1.7e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR  SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

A0A248REP7 ATP synthase subunit c, chloroplastic

1.7e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR  SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

A0A2H5QJF0 ATP-synt_C domain-containing protein

1.3e-15

96.23

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD++
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVS

A0A7J7HCR0 ATP synthase subunit alpha, mitochondrial

1.3e-15

96.3

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR+ SS
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSS

A0A7J7LSA6 ATP-synt_C domain-containing protein

1.7e-15

64.21

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD-----VSSGMKEQKRSSEGLITESYDQPTFI-KFE-KGDEYKRN
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD     + S ++  ++  EG I +     T + K E + DE++ N
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRD-----VSSGMKEQKRSSEGLITESYDQPTFI-KFE-KGDEYKRN

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

3.0e-17

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

A4QJI6 ATP synthase subunit c, chloroplastic

3.0e-17

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

Q3V547 ATP synthase subunit c, chloroplastic

3.0e-17

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

Q4FGF2 ATP synthase subunit c, chloroplastic

3.0e-17

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

Q85FN2 ATP synthase subunit c, chloroplastic

3.0e-17

100

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

2.8e-18

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Query:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
        MNPL+SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

Sequences

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CDS sequence

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mRNA sequence

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ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCAGCGGGCCAAGCT
GTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCA
TACGATCAACCAACATTTATCAAATTTGAAAAAGGTGATGAATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGAGAAGACNTTCGTTCTC
AATAGCCATGTGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCAACTATGTAGCATCTACATC
GAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGCAAAATGAATCTGTTTATCATAAAGAGATTCGTTGTT
CCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAGTAAAAGTTATGTCTTGGTCCGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTT
GCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGGAATGGGAG
TCCGCTTTGAAATCGTCCGCCCTGCACCCACCCCCCGAGTATATGCTTCAACAGGAATTAAACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCA
CCCGTAACCCAGCAGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTGCAAGGTACATTGG
TCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCGCTTACTTATATCATGATATAAGATCAAAATGA

Protein sequence

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MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRDVSSGMKEQKRSSEGLITESYDQPTFIKFEKGDEYKRN

CcUC09G173360 (gene) of Watermelon (PI 537277) v1 genome