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CcUC09G176590 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G176590
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationCicolChr09:18632593..18633658
RNA-Seq ExpressionCcUC09G176590
SyntenyCcUC09G176590
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0986.49Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IEAGDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0986.49Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IEAGDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]1.1e-0986.49Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IEAGDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
XP_022967562.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima]5.3e-0983.78Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IE GDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]1.1e-0986.49Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IEAGDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
TrEMBL top hitse value%identityAlignment
A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a1.7e-0878.38Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MD NNWRPT GGEP +EAGDWRSQLQPDSR +I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
A0A2P6QLK2 Putative coactivator CBP, KIX domain-containing protein8.3e-0875.68Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRP  GGEP ++AGDWRSQLQ DSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a1.7e-0878.38Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MD NNWRPT GGEP +EAGDWRSQLQPDSR +I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X15.2e-1086.49Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IEAGDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X12.6e-0983.78Show/hide
Query:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MDTNNWRPT GGEP IE GDWRSQLQPDSRQ+I NK+
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKM
SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a4.0e-0763.16Show/hide
Query:  MDTNNWRPT-HGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MD NNWRP+   GEP ++ GDWR+QL PDSRQ+I NK+
Subjt:  MDTNNWRPT-HGGEPKIEAGDWRSQLQPDSRQQIFNKM
Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein2.8e-0863.16Show/hide
Query:  MDTNNWRPT-HGGEPKIEAGDWRSQLQPDSRQQIFNKM
        MD NNWRP+   GEP ++ GDWR+QL PDSRQ+I NK+
Subjt:  MDTNNWRPT-HGGEPKIEAGDWRSQLQPDSRQQIFNKM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACAAATAATTGGAGACCTACTCATGGTGGAGAACCCAAAATCGAAGCCGGGGATTGGAGATCTCAATTGCAACCCGATTCTCGACAACAAATTTTCAAC
AAAATGTATGTATCATTTCTTACCTTTTTCTTACACCTCGATTCTCGTAGATGCGAACTGTTTCTAGAACGCAATTTGTTCAAATTACCCGTATTATCCGTTTCT
TTAAAGATAAGAAGCATAAGCTATTTGTGGCAGTGTGTTGGCTATTATATTTTCCATTTTTATGTTAGAATGGGGAGATTGAAGGGGCACCTTCCTGTTTCTGGT
CAAGAGGGATTGAAGAAATGGAGCCTTGACCTAAGGCAGAATGATATGAGTGAGTTGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATACAAATAATTGGAGACCTACTCATGGTGGAGAACCCAAAATCGAAGCCGGGGATTGGAGATCTCAATTGCAACCCGATTCTCGACAACAAATTTTCAAC
AAAATGTATGTATCATTTCTTACCTTTTTCTTACACCTCGATTCTCGTAGATGCGAACTGTTTCTAGAACGCAATTTGTTCAAATTACCCGTATTATCCGTTTCT
TTAAAGATAAGAAGCATAAGCTATTTGTGGCAGTGTGTTGGCTATTATATTTTCCATTTTTATGTTAGAATGGGGAGATTGAAGGGGCACCTTCCTGTTTCTGGT
CAAGAGGGATTGAAGAAATGGAGCCTTGACCTAAGGCAGAATGATATGAGTGAGTTGTGTTAA
Protein sequenceShow/hide protein sequence
MDTNNWRPTHGGEPKIEAGDWRSQLQPDSRQQIFNKMYVSFLTFFLHLDSRRCELFLERNLFKLPVLSVSLKIRSISYLWQCVGYYIFHFYVRMGRLKGHLPVSG
QEGLKKWSLDLRQNDMSELC