CuGenDBv2

Gene ID	CcUC09G177010
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Transcription initiation factor TFIID subunit 6-like
Genome location	CicolChr09:20168145..20169412
RNA-Seq Expression	CcUC09G177010
Synteny	CcUC09G177010
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0009860 - pollen tube growth (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0000124 - SAGA complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0046695 - SLIK (SAGA-like) complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR011442 - TAF6, C-terminal HEAT repeat domain IPR037796 - Transcription initiation factor TFIID subunit 6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140111.2 transcription initiation factor TFIID subunit 6 [Cucumis sativus]

4.1e-43

84.68

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLANQKNEMKRHEAW      Y    RAVGQCIYD +KIFPP+PSMPAGSILRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        ARVITTTF +K
Subjt:  ARVITTTFPSK

XP_008449395.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo]

7.4e-45

86.49

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLANQKNEMKRHEAW      Y    RAVGQCIYDR+KIFPP+PSMPAGSILRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        ARVITTTFP+K
Subjt:  ARVITTTFPSK

XP_008455502.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo]

4.5e-42

80.18

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKR+LTQHYGAI+GLAALGMNVVHLL+LPNLEPYLGLLEPEMLLA+QKNEMKRHEAW      Y    RAVGQCIY+R+KIFPP+PS PAGS+LRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        AR+ITTTFP+K
Subjt:  ARVITTTFPSK

XP_038888294.1 transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida]

4.5e-42

83.78

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLA QKNEMKRHEAW      Y    RAVGQCIYD +KIFPPMPSMPAGS+LRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        A VITTTFP K
Subjt:  ARVITTTFPSK

XP_038888295.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida]

4.5e-42

83.78

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLA QKNEMKRHEAW      Y    RAVGQCIYD +KIFPPMPSMPAGS+LRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        A VITTTFP K
Subjt:  ARVITTTFPSK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEI5 TAF domain-containing protein

2.0e-43

84.68

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLANQKNEMKRHEAW      Y    RAVGQCIYD +KIFPP+PSMPAGSILRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        ARVITTTF +K
Subjt:  ARVITTTFPSK

A0A1S3C124 transcription initiation factor TFIID subunit 6-like

2.2e-42

80.18

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKR+LTQHYGAI+GLAALGMNVVHLL+LPNLEPYLGLLEPEMLLA+QKNEMKRHEAW      Y    RAVGQCIY+R+KIFPP+PS PAGS+LRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        AR+ITTTFP+K
Subjt:  ARVITTTFPSK

A0A1S4DXQ6 transcription initiation factor TFIID subunit 6-like

3.6e-45

86.49

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLANQKNEMKRHEAW      Y    RAVGQCIYDR+KIFPP+PSMPAGSILRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        ARVITTTFP+K
Subjt:  ARVITTTFPSK

A0A5A7URU3 Transcription initiation factor TFIID subunit 6-like

3.6e-45

86.49

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKRALTQHYGAIQGLAALGMNVVHLL+LPNLEPYLGLLEPEMLLANQKNEMKRHEAW      Y    RAVGQCIYDR+KIFPP+PSMPAGSILRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        ARVITTTFP+K
Subjt:  ARVITTTFPSK

A0A5A7UT52 Transcription initiation factor TFIID subunit 6-like

2.2e-42

80.18

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN
        F DPKR+LTQHYGAI+GLAALGMNVVHLL+LPNLEPYLGLLEPEMLLA+QKNEMKRHEAW      Y    RAVGQCIY+R+KIFPP+PS PAGS+LRTN
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSILRTN

Query:  ARVITTTFPSK
        AR+ITTTFP+K
Subjt:  ARVITTTFPSK

SwissProt top hits

e value

%identity

Alignment

F4HVA6 Transcription initiation factor TFIID subunit 6b

4.5e-21

51.96

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Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA
        F DP +AL QHYGAIQG+ ALG+N+V  L+LPNL PYL LL PEM L  QK E KRH AW    +  V   A G+C+Y+RLK    + S P  S+ +TN 
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA

Query:  RV
        ++
Subjt:  RV

Q9MAU3 Transcription initiation factor TFIID subunit 6

4.4e-24

58.88

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Query:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT
        DPK+ALTQHYGAIQGLAALG  VV LL+L NLEPYL LLEPE+    QKN+MK +EAW      Y    RA G CI+ RLKIFPP+PS P+ S L   + 
Subjt:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT

Query:  NARVITT
          ++I+T
Subjt:  NARVITT

Arabidopsis top hits

e value

%identity

Alignment

AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59

3.1e-25

58.88

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Query:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT
        DPK+ALTQHYGAIQGLAALG  VV LL+L NLEPYL LLEPE+    QKN+MK +EAW      Y    RA G CI+ RLKIFPP+PS P+ S L   + 
Subjt:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT

Query:  NARVITT
          ++I+T
Subjt:  NARVITT

AT1G04950.2 TATA BOX ASSOCIATED FACTOR II 59

3.1e-25

58.88

Show/hide

Query:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT
        DPK+ALTQHYGAIQGLAALG  VV LL+L NLEPYL LLEPE+    QKN+MK +EAW      Y    RA G CI+ RLKIFPP+PS P+ S L   + 
Subjt:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT

Query:  NARVITT
          ++I+T
Subjt:  NARVITT

AT1G04950.3 TATA BOX ASSOCIATED FACTOR II 59

3.1e-25

58.88

Show/hide

Query:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT
        DPK+ALTQHYGAIQGLAALG  VV LL+L NLEPYL LLEPE+    QKN+MK +EAW      Y    RA G CI+ RLKIFPP+PS P+ S L   + 
Subjt:  DPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTY-VFQRAVGQCIYDRLKIFPPMPSMPAGSIL---RT

Query:  NARVITT
          ++I+T
Subjt:  NARVITT

AT1G54360.1 TBP-ASSOCIATED FACTOR 6B

3.2e-22

51.96

Show/hide

Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA
        F DP +AL QHYGAIQG+ ALG+N+V  L+LPNL PYL LL PEM L  QK E KRH AW    +  V   A G+C+Y+RLK    + S P  S+ +TN 
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA

Query:  RV
        ++
Subjt:  RV

AT1G54360.2 TBP-ASSOCIATED FACTOR 6B

3.2e-22

51.96

Show/hide

Query:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA
        F DP +AL QHYGAIQG+ ALG+N+V  L+LPNL PYL LL PEM L  QK E KRH AW    +  V   A G+C+Y+RLK    + S P  S+ +TN 
Subjt:  FADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNA

Query:  RV
        ++
Subjt:  RV

Sequences

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CDS sequence

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ATGTTTGCAGATCCTAAACGGGCATTGACTCAACATTATGGTGCGATTCAAGGATTAGCAGCCTTGGGGATGAATGTGGTTCACCTCCTTATGCTACCAAATCTT
GAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAATCAAAAGAATGAGATGAAAAGGCATGAAGCCTGGTGGAATGGTGTATCGACGTATGTTTTC
CAGCGAGCTGTTGGTCAATGCATATATGATCGTCTCAAGATTTTTCCTCCTATGCCTAGTATGCCTGCTGGTTCTATCTTGCGGACGAATGCTAGAGTTATCACC
ACCACTTTCCCGAGTAAGCTCTTGCAACCTTACTTAAATTGA

mRNA sequence

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Protein sequence

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MFADPKRALTQHYGAIQGLAALGMNVVHLLMLPNLEPYLGLLEPEMLLANQKNEMKRHEAWWNGVSTYVFQRAVGQCIYDRLKIFPPMPSMPAGSILRTNARVIT
TTFPSKLLQPYLN

CcUC09G177010 (gene) of Watermelon (PI 537277) v1 genome