CuGenDBv2

Gene ID	CcUC09G177560
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	CicolChr09:22698870..22705513
RNA-Seq Expression	CcUC09G177560
Synteny	CcUC09G177560
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAS60048.1 photosystem II CP43 protein, partial [Ecdeiocolea monostachya]

1.4e-72

91.22

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Query:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
        +  A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
Subjt:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW

Query:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

AFA27424.1 photosystem II CP43 chlorophyll apoprotein, partial [Ecdeiocolea monostachya]

1.4e-72

91.22

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Query:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
        +  A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
Subjt:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW

Query:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

KAG6736874.1 hypothetical protein POTOM_060215 [Populus tomentosa]

9.4e-77

97.2

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Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL
        LGAL+VFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEV+FGGETMRFWDLRAPWLEPLRGPNGL
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL

Query:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVIYGMQEGLVQL
        DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVIYG +EGLVQL
Subjt:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVIYGMQEGLVQL

QVL25934.1 photosystem II CP43 chlorophyll apoprotein [Isodon ternifolius]

3.8e-78

80.1

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Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL

Query:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVILNLF
        DLSRLKKDIQPWQERRSAEYMTHAPLGSLNS                                 VI G +EGLVQL QD KKELIVILNLF
Subjt:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVILNLF

VVW86933.1 unnamed protein product, partial [Nymphaea colorata]

2.0e-74

73.4

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALS+FGF ACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVI
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS                                 VI GM+EG VQL Q LKKE I I
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVI

Query:  LNL
         NL
Subjt:  LNL

TrEMBL top hits

e value

%identity

Alignment

A0A0G3FF74 Photosystem II CP43 reaction center protein

8.9e-73

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

A0A2Z5WMV9 Photosystem II CP43 reaction center protein

8.9e-73

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

A0A5K1HG59 Uncharacterized protein (Fragment)

9.5e-75

73.4

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALS+FGF ACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVI
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS                                 VI GM+EG VQL Q LKKE I I
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNS---------------------------------VIYGMQEGLVQLPQDLKKELIVI

Query:  LNL
         NL
Subjt:  LNL

A0AS17 Photosystem II CP43 reaction center protein (Fragment)

6.8e-73

91.22

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Query:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
        +  A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
Subjt:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW

Query:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

H6T045 Photosystem II CP43 chlorophyll apoprotein (Fragment)

6.8e-73

91.22

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Query:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
        +  A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW
Subjt:  INPADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFW

Query:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  DLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

SwissProt top hits

e value

%identity

Alignment

A6MMB8 Photosystem II CP43 reaction center protein

2.4e-75

93.1

Show/hide

Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

P0C365 Photosystem II CP43 reaction center protein

2.4e-75

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

Q0G9M3 Photosystem II CP43 reaction center protein

2.4e-75

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

Q6ENJ0 Photosystem II CP43 reaction center protein

2.4e-75

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

Q7YJX6 Photosystem II CP43 reaction center protein

2.4e-75

93.1

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Query:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
        A  ++ E Y+   LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR
Subjt:  ADTYNSEEYV--FLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLR

Query:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  APWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.6e-74

98.48

Show/hide

Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL
        L ALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGL

Query:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
        DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV
Subjt:  DLSRLKKDIQPWQERRSAEYMTHAPLGSLNSV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACTTGTTCCCATTCAATAGTCAAGAATTCTTGACGGTATCGAGCTGGAACAATCTGTTCTTCCTGAATACCCGGATTCAGTGCCAAAGAATTTCCTGTCGC
TACCATATATCCAACATTAATTCCTTCAGACGTGTCAATTGGGCAAATGCGTCCATAATGACTAGGATGGATATCTCGTATCCGAAAACTAGCAAGCCAATCCGA
ATTGATCTTGTAAGAGATCCGCGACAGAACGAATCCGTTTATTTTTCAAATGATTCATATCGTCAAGTGTACCCATTCCAAATTTCAGTCCAATCAAATGATCTG
CAGCTGCCAATATATCTCGCGGAAAGACAAAAAAATTTCAGGATATTATGGTGCCGGTATAGACCGAAATTCCGTTATGGTCCAATTCTGACCGAAGTTCCCAGG
GAATTCATTAGAGGAATGTTTCCAATAAAAATTGTTTGTTCTTGCATATCCCTACGGGTTTTCCAAATTAATCCTGCGGATACGTATAATTCAGAAGAATATGTA
TTTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCT
TCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCT
CCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGA
CTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCCTTAGGTTCTTTAAATTCCGTCATTTATGGCATGCAGGAAGGG
CTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNLFPFNSQEFLTVSSWNNLFFLNTRIQCQRISCRYHISNINSFRRVNWANASIMTRMDISYPKTSKPIRIDLVRDPRQNESVYFSNDSYRQVYPFQISVQSNDL
QLPIYLAERQKNFRILWCRYRPKFRYGPILTEVPREFIRGMFPIKIVCSCISLRVFQINPADTYNSEEYVFLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEA
SQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVIYGMQEG
LVQLPQDLKKELIVILNLFCS

CcUC09G177560 (gene) of Watermelon (PI 537277) v1 genome