CuGenDBv2

Gene ID	CcUC09G177660
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	18S rRNA aminocarboxypropyltransferase
Genome location	CicolChr09:23105846..23106452
RNA-Seq Expression	CcUC09G177660
Synteny	CcUC09G177660
Gene Ontology terms	GO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process) GO:0030490 - maturation of SSU-rRNA (biological process) GO:0005737 - cytoplasm (cellular component) GO:0106388 - rRNA small subunit aminocarboxypropyltransferase activity (molecular function) GO:1904047 - S-adenosyl-L-methionine binding (molecular function)
InterPro domains	IPR007209 - RNase L inhibitor RLI-like, possible metal-binding domain IPR022968 - 16S/18S rRNA aminocarboxypropyltransferase Tsr3

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008453772.1 PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]

4.2e-33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

XP_008453773.1 PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo]

4.2e-33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

XP_011653126.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus]

7.2e-33

90.67

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

XP_031745815.1 ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus]

7.2e-33

90.67

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

XP_038896612.1 18S rRNA aminocarboxypropyltransferase [Benincasa hispida]

1.0e-34

94.67

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLP DPANDEEPTSP IQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXU5 18S rRNA aminocarboxypropyltransferase

1.6e-33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNK RRFKNHHPRRGQSTRGHKFIGEDECLP DPAN+EEPT PNI LAMWDFGQCD KRCTGRKLARFGLLKE
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

A0A1S3BX27 18S rRNA aminocarboxypropyltransferase

2.1e-33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

A0A1S3BXV8 18S rRNA aminocarboxypropyltransferase

2.1e-33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGEDE LP DPAN+EEPT PNIQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

A0A6J1C5M7 18S rRNA aminocarboxypropyltransferase

3.5e-33

89.33

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQSTRGHKFIGED+CLP DPAN+EEP  P IQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

A0A6J1J6L0 18S rRNA aminocarboxypropyltransferase

5.6e-31

86.67

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Query:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        MSHNKPRRFKNHHPRRGQS+RGHKFIGEDECLP DP N+EE   P IQLAMWDFGQCD KRCTGRKLARFGLLK+
Subjt:  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

SwissProt top hits

e value

%identity

Alignment

Q12094 18S rRNA aminocarboxypropyltransferase

3.5e-06

42.25

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Query:  NKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK
        NK    KN  P+RG    GH        +     N E+   P ++LAMWDF  CD KRC+G+KL R GL+K
Subjt:  NKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK

Q5HZH2 18S rRNA aminocarboxypropyltransferase

2.3e-05

60.61

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Query:  PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK
        P +    LAMW+ G CD KRCTGRKLAR GL++
Subjt:  PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK

Q9UJK0 18S rRNA aminocarboxypropyltransferase

5.1e-05

57.58

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Query:  PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK
        P +    LAMW+ G CD +RCTGRKLAR GL++
Subjt:  PTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLK

Arabidopsis top hits

e value

%identity

Alignment

AT5G10070.1 RNase L inhibitor protein-related

1.9e-15

57.35

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Query:  KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        K++  + G S+RG       EDE LP D   ++E   P +QLAMWDFGQCD KRCTGRKLARF LLKE
Subjt:  KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

AT5G10070.2 RNase L inhibitor protein-related

1.9e-15

57.35

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Query:  KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE
        K++  + G S+RG       EDE LP D   ++E   P +QLAMWDFGQCD KRCTGRKLARF LLKE
Subjt:  KNHHPRRGQSTRGH--KFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKE

Sequences

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CDS sequence

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ATGAGCCATAACAAGCCTAGGCGCTTCAAAAATCATCATCCCCGTCGCGGACAATCTACTCGAGGCCATAAATTTATTGGAGAGGACGAGTGTTTGCCAAACGACCCAGC
CAATGATGAGGAGCCAACGAGTCCAAACATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATACAAAAAGGTGTACAGGACGCAAGCTTGCACGATTTGGCTTGTTAA
AAGAACGTACCTAA

mRNA sequence

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Protein sequence

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MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPNDPANDEEPTSPNIQLAMWDFGQCDTKRCTGRKLARFGLLKERT

CcUC09G177660 (gene) of Watermelon (PI 537277) v1 genome