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CcUC09G178280 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G178280
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLA RNA-binding protein
Genome locationCicolChr09:26197630..26216198
RNA-Seq ExpressionCcUC09G178280
SyntenyCcUC09G178280
Gene Ontology termsNA
InterPro domainsIPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570320.1 Protein argonaute 4, partial [Cucurbita argyrosperma subsp. sororia]4.7e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
KAG7010213.1 La-related protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
XP_022944219.1 LOW QUALITY PROTEIN: la-related protein 1A-like [Cucurbita moschata]4.7e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
XP_022986432.1 la-related protein 1A-like [Cucurbita maxima]2.1e-0858.73Show/hide
Query:  LIPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        LIP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  LIPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
XP_023512713.1 la-related protein 1A-like isoform X1 [Cucurbita pepo subsp. pepo]4.7e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
TrEMBL top hitse value%identityAlignment
A0A0A0KWS8 HTH La-type RNA-binding domain-containing protein6.7e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP PIN    +L   + A+    ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
A0A6J1FWB7 LOW QUALITY PROTEIN: la-related protein 1A-like2.3e-0858.06Show/hide
Query:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        IP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  IPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
A0A6J1H0Y5 la-related protein 1A3.9e-0896.67Show/hide
Query:  DENLKNDHYLISLMDDHGWVPISAIAEFKR
        DENLKNDHYLISLM+DHGWVPISAIAEFKR
Subjt:  DENLKNDHYLISLMDDHGWVPISAIAEFKR
A0A6J1J7I3 la-related protein 1A-like1.0e-0858.73Show/hide
Query:  LIPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        LIP P+N    +L   + A+ D  ++ +     DENLK DHYLISLMDDHGWVPISAIAEFKR
Subjt:  LIPQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
A0A6J1K7U3 la-related protein 1A3.9e-0896.67Show/hide
Query:  DENLKNDHYLISLMDDHGWVPISAIAEFKR
        DENLKNDHYLISLM+DHGWVPISAIAEFKR
Subjt:  DENLKNDHYLISLMDDHGWVPISAIAEFKR
SwissProt top hitse value%identityAlignment
Q940X9 La-related protein 1A4.2e-0750.82Show/hide
Query:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        P P+N+   +LS     + D  L+ V     DENL+NDHYLISLMD+ GWVP   IA FKR
Subjt:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
Arabidopsis top hitse value%identityAlignment
AT5G21160.1 LA RNA-binding protein3.0e-0850.82Show/hide
Query:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        P P+N+   +LS     + D  L+ V     DENL+NDHYLISLMD+ GWVP   IA FKR
Subjt:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
AT5G21160.2 LA RNA-binding protein3.0e-0850.82Show/hide
Query:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        P P+N+   +LS     + D  L+ V     DENL+NDHYLISLMD+ GWVP   IA FKR
Subjt:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
AT5G21160.3 LA RNA-binding protein3.0e-0850.82Show/hide
Query:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR
        P P+N+   +LS     + D  L+ V     DENL+NDHYLISLMD+ GWVP   IA FKR
Subjt:  PQPINKLHVVLSYILYAVVD--LQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCTCGTTCGTCCGCTCGCTCATTGATCCCGCAGCCAATCAACAAGCTTCATGTGGTTCTGTCCTACATTCTCTACGCCGTCGTCGATCTTCAACCAGTC
ATCGCTGCCGCACACGATGAAAATCTGAAGAATGACCATTACCTAATATCTTTGATGGATGACCATGGATGGGTTCCAATATCAGCCATTGCTGAATTCAAAAGG
AGAGAAGGGAAACCTAGACATATTGAGAAAGAGAATAAGCTCGCAACCTTGCACGCTGAGGCCGAATATTTCATATATATAGCTAGGTTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCTCGTTCGTCCGCTCGCTCATTGATCCCGCAGCCAATCAACAAGCTTCATGTGGTTCTGTCCTACATTCTCTACGCCGTCGTCGATCTTCAACCAGTC
ATCGCTGCCGCACACGATGAAAATCTGAAGAATGACCATTACCTAATATCTTTGATGGATGACCATGGATGGGTTCCAATATCAGCCATTGCTGAATTCAAAAGG
AGAGAAGGGAAACCTAGACATATTGAGAAAGAGAATAAGCTCGCAACCTTGCACGCTGAGGCCGAATATTTCATATATATAGCTAGGTTGAATTGA
Protein sequenceShow/hide protein sequence
MVPRSSARSLIPQPINKLHVVLSYILYAVVDLQPVIAAAHDENLKNDHYLISLMDDHGWVPISAIAEFKRREGKPRHIEKENKLATLHAEAEYFIYIARLN