; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC09G178690 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G178690
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA repair protein XRCC4
Genome locationCicolChr09:27536990..27541208
RNA-Seq ExpressionCcUC09G178690
SyntenyCcUC09G178690
Gene Ontology termsGO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0010165 - response to X-ray (biological process)
GO:0051103 - DNA ligation involved in DNA repair (biological process)
GO:0051351 - positive regulation of ligase activity (biological process)
GO:0005958 - DNA-dependent protein kinase-DNA ligase 4 complex (cellular component)
GO:0032807 - DNA ligase IV complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR010585 - DNA repair protein XRCC4
IPR014751 - DNA repair protein XRCC4-like, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571850.1 DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]1.3e-10575.85Show/hide
Query:  QSQKSPMEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPS
        +++KS M+A RHTCLKLEVPTN Q + R SIFVKGTW  HRFDLSITDGLNAWTCH                           TEDEVRLRA QWDQEPS
Subjt:  QSQKSPMEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPS

Query:  DYVALAERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKI
        DYV+LAERYLGFQQP SVYGF+D GNGDKRLSWTF+KEGMKLEWRWKC+ ASDNKT TAGILDFLM ANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I
Subjt:  DYVALAERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKI

Query:  CDEKVDFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        C+EKV+FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Subjt:  CDEKVDFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

XP_004136882.1 DNA repair protein XRCC4 [Cucumis sativus]3.5e-11181.85Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q NERSSIFVKGTWNH RFDLSITDG +AWTCH                           TEDEVRLRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGS+Y F+DAGNG KRLSWTFDKEGMKLEWRWKCQPASDNKT TAGIL+FLM ANIRLSEEVVRK QS ERLK ESEKCLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

XP_008455175.1 PREDICTED: DNA repair protein XRCC4 [Cucumis melo]7.6e-11483.4Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q +ERSSIFVKGTWNHHRFDLSITDGL+AWTCH                           TEDEVRLRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGS+YGF+DAGNG KRLSWTFDKEGMKLEWRWKCQPASDNKT TA IL+FLM ANIRLSEEVVRKTQS ERLK ESEKCLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

XP_022952201.1 DNA repair protein XRCC4 [Cucurbita moschata]1.9e-10476.83Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q + R SIFVKGTW  HRFDLSITDGLNAWTCH                           TEDEVRLRA QWDQEPSDYV+LA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQP SVYGF+D GNGDKRLSWTF+KEGMKLEWRWKC+ ASDNKT TAGILDFLM ANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+IC+EKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

XP_038888651.1 DNA repair protein XRCC4 [Benincasa hispida]6.9e-11583.4Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+ATRHTCLKLEVPTN Q N+RSSIFVKGTWNHH FDLSITDGLNAW+CH                           TEDEV LRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGSVYGF+DAGNGD+RLSWTFDKEGMKLEWRWKC+PASDNKT TAGILDFLM ANIRLSEEVVRKTQ FERLK ESE+CLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

TrEMBL top hitse value%identityAlignment
A0A0A0K2L2 Uncharacterized protein1.7e-11181.85Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q NERSSIFVKGTWNH RFDLSITDG +AWTCH                           TEDEVRLRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGS+Y F+DAGNG KRLSWTFDKEGMKLEWRWKCQPASDNKT TAGIL+FLM ANIRLSEEVVRK QS ERLK ESEKCLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

A0A1S3BZW1 DNA repair protein XRCC43.7e-11483.4Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q +ERSSIFVKGTWNHHRFDLSITDGL+AWTCH                           TEDEVRLRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGS+YGF+DAGNG KRLSWTFDKEGMKLEWRWKCQPASDNKT TA IL+FLM ANIRLSEEVVRKTQS ERLK ESEKCLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

A0A5A7SK69 DNA repair protein XRCC43.7e-11483.4Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q +ERSSIFVKGTWNHHRFDLSITDGL+AWTCH                           TEDEVRLRAAQWDQEPSDYVALA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQPGS+YGF+DAGNG KRLSWTFDKEGMKLEWRWKCQPASDNKT TA IL+FLM ANIRLSEEVVRKTQS ERLK ESEKCLAQSEKICDEKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

A0A6J1CL88 DNA repair protein XRCC4-like3.4e-10478.93Show/hide
Query:  MEATRHTCLKLEVPTNVQANE-RSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVAL
        M+A RHTCLKLEVP+  Q+NE RS  FVKGTW  HRFDLSITDGLNAWTCH                           TEDEVRLRA QWDQEPSDYVAL
Subjt:  MEATRHTCLKLEVPTNVQANE-RSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVAL

Query:  AERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKV
        AER+LGFQQPGSVYGF+DAGNGDKRLSWTFDKEGMKLEWRW CQPASDNK  TAGILDFLM ANIRLSEEVVRKTQSFERLKVESE CLAQSEKI  EKV
Subjt:  AERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKV

Query:  DFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQ-EEYSSDKTESFDDESDAEKN
        +FETAIYAKFLNVLN+KKAKLR YRDQLSKQTT  SKLKQ EEYSSDKTE+FDDESDAEKN
Subjt:  DFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQ-EEYSSDKTESFDDESDAEKN

A0A6J1GJL0 DNA repair protein XRCC49.1e-10576.83Show/hide
Query:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA
        M+A RHTCLKLEVPTN Q + R SIFVKGTW  HRFDLSITDGLNAWTCH                           TEDEVRLRA QWDQEPSDYV+LA
Subjt:  MEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALA

Query:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD
        ERYLGFQQP SVYGF+D GNGDKRLSWTF+KEGMKLEWRWKC+ ASDNKT TAGILDFLM ANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+IC+EKV+
Subjt:  ERYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVD

Query:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
        FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Subjt:  FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

SwissProt top hitse value%identityAlignment
Q682V0 DNA repair protein XRCC43.7e-7155.6Show/hide
Query:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE
        E T+HTCL+LE+      +    IFVKGTW++ RFD+S+TDG ++W C+                           TE+EV  RAAQWDQ  S+Y+ LAE
Subjt:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE

Query:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF
        +YLGFQQP SVY FSDA  G KRLSWTF+KEG KLEWRWKC+P+ D+K IT GILDFLM ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+CDEK +F
Subjt:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF

Query:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN
        E+A YAKFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Subjt:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN

Arabidopsis top hitse value%identityAlignment
AT1G61410.1 DNA double-strand break repair and VJ recombination XRCC41.0e-2057.69Show/hide
Query:  MHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESF-----DDES
        M ANIRLSEEVV KT+SFE++K E+E+CLAQ EK+CDEK +FE A YAKFL+VLNAKKAKLR  RD+         +  +EE S+ K ESF     DDE 
Subjt:  MHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESF-----DDES

Query:  DAEK
          E+
Subjt:  DAEK

AT3G23100.1 homolog of human DNA ligase iv-binding protein XRCC42.6e-7255.6Show/hide
Query:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE
        E T+HTCL+LE+      +    IFVKGTW++ RFD+S+TDG ++W C+                           TE+EV  RAAQWDQ  S+Y+ LAE
Subjt:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE

Query:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF
        +YLGFQQP SVY FSDA  G KRLSWTF+KEG KLEWRWKC+P+ D+K IT GILDFLM ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+CDEK +F
Subjt:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF

Query:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN
        E+A YAKFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Subjt:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN

AT3G23100.2 homolog of human DNA ligase iv-binding protein XRCC42.6e-7255.6Show/hide
Query:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE
        E T+HTCL+LE+      +    IFVKGTW++ RFD+S+TDG ++W C+                           TE+EV  RAAQWDQ  S+Y+ LAE
Subjt:  EATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAE

Query:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF
        +YLGFQQP SVY FSDA  G KRLSWTF+KEG KLEWRWKC+P+ D+K IT GILDFLM ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+CDEK +F
Subjt:  RYLGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDF

Query:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN
        E+A YAKFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Subjt:  ETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCAAAGTCAAAAAAGCCCCATGGAAGCAACCAGGCACACATGCTTGAAGCTTGAAGTACCAACCAACGTGCAGGCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCAC
TTGGAATCATCACCGCTTCGATCTCTCCATCACCGACGGCCTCAATGCTTGGACGTGTCATGGTGCCATTTCTGAAACTACCACTCAGTTAACTTCACTTGGTTTCTCTT
CTATTCCGCTCTTCCCTCGAGTTTATTCTCCAACGGAGGACGAGGTTCGATTACGCGCTGCACAATGGGACCAAGAACCATCGGACTATGTGGCCTTGGCAGAGCGCTAT
TTAGGGTTTCAACAGCCTGGTTCGGTCTATGGCTTTTCCGATGCTGGAAATGGGGACAAGAGACTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATG
GAAGTGTCAACCAGCGTCTGATAATAAGACAATTACAGCAGGAATATTGGACTTTCTCATGCATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAT
TTGAGAGGCTGAAGGTGGAGTCTGAGAAGTGTTTGGCTCAGAGCGAGAAGATTTGTGATGAAAAGGTGGACTTTGAAACTGCAATATACGCAAAGTTTCTAAATGTCTTG
AACGCAAAGAAGGCAAAACTTAGAGAGTATCGAGATCAGCTTTCAAAACAGACTACTACTGGTAGCAAACTGAAACAGGAAGAGTACTCCTCTGATAAAACCGAATCTTT
CGACGATGAAAGTGATGCAGAAAAAAACTGA
mRNA sequenceShow/hide mRNA sequence
AGGCAAAGTCAAAAAAGCCCCATGGAAGCAACCAGGCACACATGCTTGAAGCTTGAAGTACCAACCAACGTGCAGGCGAACGAAAGAAGCTCCATCTTCGTCAAAGGCAC
TTGGAATCATCACCGCTTCGATCTCTCCATCACCGACGGCCTCAATGCTTGGACGTGTCATGGTGCCATTTCTGAAACTACCACTCAGTTAACTTCACTTGGTTTCTCTT
CTATTCCGCTCTTCCCTCGAGTTTATTCTCCAACGGAGGACGAGGTTCGATTACGCGCTGCACAATGGGACCAAGAACCATCGGACTATGTGGCCTTGGCAGAGCGCTAT
TTAGGGTTTCAACAGCCTGGTTCGGTCTATGGCTTTTCCGATGCTGGAAATGGGGACAAGAGACTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATG
GAAGTGTCAACCAGCGTCTGATAATAAGACAATTACAGCAGGAATATTGGACTTTCTCATGCATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAT
TTGAGAGGCTGAAGGTGGAGTCTGAGAAGTGTTTGGCTCAGAGCGAGAAGATTTGTGATGAAAAGGTGGACTTTGAAACTGCAATATACGCAAAGTTTCTAAATGTCTTG
AACGCAAAGAAGGCAAAACTTAGAGAGTATCGAGATCAGCTTTCAAAACAGACTACTACTGGTAGCAAACTGAAACAGGAAGAGTACTCCTCTGATAAAACCGAATCTTT
CGACGATGAAAGTGATGCAGAAAAAAACTGACAAAGTGTATCATTTTAGACGTGAAAGCCTCTAACTGGTATGACTTGCGGATCAAGGAATGTTACATGCAATAAGTTGG
ATCTGTTATCTATGATGGTATGTTACATTTCTTTTTTTCCCTCTCTTTTGAAAACAACAAATGTGGGAGAGGATTTGAATCTTGTAATGATGAACTATGTTTATAAAAAC
AGGGGATGGTTCAAAATACTACACTTTGATAGAAAAATAAAAAATCTTGG
Protein sequenceShow/hide protein sequence
RQSQKSPMEATRHTCLKLEVPTNVQANERSSIFVKGTWNHHRFDLSITDGLNAWTCHGAISETTTQLTSLGFSSIPLFPRVYSPTEDEVRLRAAQWDQEPSDYVALAERY
LGFQQPGSVYGFSDAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTITAGILDFLMHANIRLSEEVVRKTQSFERLKVESEKCLAQSEKICDEKVDFETAIYAKFLNVL
NAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN