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CcUC09G179600 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G179600
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationCicolChr09:29838665..29839445
RNA-Seq ExpressionCcUC09G179600
SyntenyCcUC09G179600
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDY33712.1 BnaC04g29390D [Brassica napus]8.3e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

QCE06694.1 photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata]1.4e-2988.41Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGL  R+Q+VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

VAH12918.1 unnamed protein product [Triticum turgidum subsp. durum]7.1e-2990.91Show/hide
Query:  MALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        MALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQAVNPAWG EGF
Subjt:  MALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

VDD65784.1 unnamed protein product, partial [Brassica oleracea]8.3e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

VDD65855.1 unnamed protein product, partial [Brassica oleracea]8.3e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

TrEMBL top hitse value%identityAlignment
A0A287RJM5 Photosystem II CP47 reaction center protein3.1e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQAVNPAWG EGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

A0A287U562 Photosystem II CP47 reaction center protein3.1e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQAVNPAWG EGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

A0A3P6H6P7 Uncharacterized protein (Fragment)4.0e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

A0A3P6HBS4 Uncharacterized protein (Fragment)4.0e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

A0A452YMI5 Uncharacterized protein3.1e-3089.86Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
        A SMALYELAVFDPSDPVLDPMWRQG+ CFGFGAFHVTGLYGPGI VSDPYGLT +VQAVNPAWG EGF
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

SwissProt top hitse value%identityAlignment
B5LMP9 Photosystem II CP47 reaction center protein8.7e-2239.49Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQG+                                                                         
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------

Query:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                       GCFGFGAFHVTGL+GPGI VSDPYGLT RVQ+VNPAWGV+GF
Subjt:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

Q09WZ1 Photosystem II CP47 reaction center protein3.0e-2240.76Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQG+                                                                         
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------

Query:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                        CFGFGAFHVTGLYGPGI VSDPYGLT RVQAVNPAWGVEGF
Subjt:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

Q0G9T6 Photosystem II CP47 reaction center protein8.7e-2240.13Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQ                                                                           
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------

Query:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                     GL CFGFGAFHVTGLYGPGI VSDPYGLT +VQ+VNPAWGVEGF
Subjt:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

Q2QD63 Photosystem II CP47 reaction center protein3.5e-2342.04Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQ                                                                           
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------

Query:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                     GLGCFGFGAFHVTGLYGPGI VSDPYGLT RVQAVNPAWGVEGF
Subjt:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

Q9BBQ8 Photosystem II CP47 reaction center protein6.6e-2240.76Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQ                                                                           
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQ---------------------------------------------------------------------------

Query:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                     GL CFGFGAFHVTGLYGPGI VSDPYGLT RVQ VNPAWGVEGF
Subjt:  -------------GLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF

Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B1.8e-2239.49Show/hide
Query:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------
        A SMALYELAVFDPSDPVLDPMWRQG+                                                                         
Subjt:  ASSMALYELAVFDPSDPVLDPMWRQGL-------------------------------------------------------------------------

Query:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF
                        CFGFGAFHVTGLYGPGI VSDPYGLT +VQ VNPAWGVEGF
Subjt:  ---------------GCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTTCTAGTAAGATTGATAATATGAATACCTTTACGTTTTGCAGAGATATAAGGTGCCATTCTAGGATTCCATTTCCTGCCAGTTCAATGGCCCTATAC
GAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGT
CCGGGAATCTTGGTATCCGATCCTTATGGATTAACCGAAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGCTTTTATTGTTGCTGGAACTATGTGGTA
TGGTTCAACAACTACCCCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTTCTAGTAAGATTGATAATATGAATACCTTTACGTTTTGCAGAGATATAAGGTGCCATTCTAGGATTCCATTTCCTGCCAGTTCAATGGCCCTATAC
GAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGT
CCGGGAATCTTGGTATCCGATCCTTATGGATTAACCGAAAGGGTACAAGCTGTAAATCCTGCGTGGGGTGTCGAAGGCTTTTATTGTTGCTGGAACTATGTGGTA
TGGTTCAACAACTACCCCGATTGA
Protein sequenceShow/hide protein sequence
MSSSSKIDNMNTFTFCRDIRCHSRIPFPASSMALYELAVFDPSDPVLDPMWRQGLGCFGFGAFHVTGLYGPGILVSDPYGLTERVQAVNPAWGVEGFYCCWNYVV
WFNNYPD